HL_6BOH_186

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CG(PSU)AAC(5MU)A(PSU)AA(4OC)G

Length

13 nucleotides

Bulged bases

6BOH|1|GB|A|1913, 6BOH|1|GB|C|1914, 6BOH|1|GB|A|1916

QA status

Modified nucleotides: PSU, 5MU, 4OC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOH_186 not in the Motif Atlas

Homologous match to HL_7RQB_048

Geometric discrepancy: 0.1369

The information below is about HL_7RQB_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6BOH|1|GB|C|1909
6BOH|1|GB|G|1910
6BOH|1|GB|PSU|1911
6BOH|1|GB|A|1912
6BOH|1|GB|A|1913
6BOH|1|GB|C|1914
6BOH|1|GB|5MU|1915
6BOH|1|GB|A|1916
6BOH|1|GB|PSU|1917
6BOH|1|GB|A|1918
6BOH|1|GB|A|1919
6BOH|1|GB|4OC|1920
6BOH|1|GB|G|1921

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain FB

Small subunit ribosomal RNA; SSU rRNA

Chain NC

Transfer RNA; tRNA

Chain OC

Peptide chain release factor 1