HL_6BOH_194

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGCAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOH_194 not in the Motif Atlas

Homologous match to HL_7RQB_056

Geometric discrepancy: 0.1207

The information below is about HL_7RQB_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12078.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

6BOH|1|GB|C|2324
6BOH|1|GB|G|2325
6BOH|1|GB|C|2326
6BOH|1|GB|A|2327
6BOH|1|GB|A|2328
6BOH|1|GB|G|2329
6BOH|1|GB|G|2330
6BOH|1|GB|G|2331

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain CC

50S ribosomal protein L27

Chain MB

50S ribosomal protein L5

Chain NC

Transfer RNA; tRNA