HL_6BOH_196

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOH_196 not in the Motif Atlas

Homologous match to HL_7RQB_058

Geometric discrepancy: 0.1013

The information below is about HL_7RQB_058

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6BOH|1|GB|C|2374
6BOH|1|GB|G|2375
6BOH|1|GB|A|2376
6BOH|1|GB|A|2377
6BOH|1|GB|A|2378
6BOH|1|GB|G|2379

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain IC

50S ribosomal protein L33

Chain UB

50S ribosomal protein L18