HL_6BOH_197

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

6BOH|1|GB|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOH_197 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.162

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

6BOH|1|GB|C|2404
6BOH|1|GB|G|2405
6BOH|1|GB|U|2406
6BOH|1|GB|G|2407
6BOH|1|GB|U|2408
6BOH|1|GB|G|2409
6BOH|1|GB|G|2410
6BOH|1|GB|A|2411
6BOH|1|GB|A|2412
6BOH|1|GB|G|2413

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain DC

50S ribosomal protein L28

Chain RB

50S ribosomal protein L15