HL_6BOH_205

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCGUCAAGC

Length

9 nucleotides

Bulged bases

6BOH|1|GB|U|2797

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOH_205 not in the Motif Atlas

Homologous match to HL_4WF9_063

Geometric discrepancy: 0.4822

The information below is about HL_4WF9_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6BOH|1|GB|G|2793
6BOH|1|GB|C|2794
6BOH|1|GB|G|2795
6BOH|1|GB|U|2797
6BOH|1|GB|C|2798
6BOH|1|GB|A|2799
6BOH|1|GB|A|2801
6BOH|1|GB|G|2802
6BOH|1|GB|C|2803

Current chains

Chain GB

23S ribosomal RNA

Nearby chains