HL_6BOH_206

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

6BOH|1|GB|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOH_206 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.1125

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6BOH|1|GB|G|2819
6BOH|1|GB|A|2820
6BOH|1|GB|A|2821
6BOH|1|GB|G|2822
6BOH|1|GB|A|2823
6BOH|1|GB|C|2824
6BOH|1|GB|G|2825
6BOH|1|GB|A|2826
6BOH|1|GB|C|2827

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain KB

50S ribosomal protein L3

Chain TB

50S ribosomal protein L17

Chain VB

50S ribosomal protein L19