3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GGCGAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6BOH_209 not in the Motif Atlas
Homologous match to HL_7A0S_070
Geometric discrepancy: 0.1631
The information below is about HL_7A0S_070
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

6BOH|1|HB|G|86
6BOH|1|HB|G|87
6BOH|1|HB|C|88
6BOH|1|HB|G|89|||A
6BOH|1|HB|A|89|||B
6BOH|1|HB|C|90

Current chains

Chain HB
5S ribosomal RNA

Nearby chains

Chain BC
50S ribosomal protein L25
Chain GB
Large subunit ribosomal RNA; LSU rRNA
Chain SB
50S ribosomal protein L16

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