HL_6BOH_209

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGCGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOH_209 not in the Motif Atlas

Homologous match to HL_7A0S_070

Geometric discrepancy: 0.1631

The information below is about HL_7A0S_070

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6BOH|1|HB|G|86
6BOH|1|HB|G|87
6BOH|1|HB|C|88
6BOH|1|HB|G|89|||A
6BOH|1|HB|A|89|||B
6BOH|1|HB|C|90

Current chains

Chain HB

5S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L25

Chain GB

Large subunit ribosomal RNA; LSU rRNA

Chain SB

50S ribosomal protein L16