HL_6BOH_218
3D structure
- PDB id
- 6BOH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- UCGG(5MU)(PSU)CAAAUCCGG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6BOH_218 not in the Motif Atlas
- Homologous match to HL_5E81_238
- Geometric discrepancy: 0.4797
- The information below is about HL_5E81_238
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6BOH|1|NC|U|50
6BOH|1|NC|C|51
6BOH|1|NC|G|52
6BOH|1|NC|G|53
6BOH|1|NC|5MU|54
6BOH|1|NC|PSU|55
6BOH|1|NC|C|56
6BOH|1|NC|A|57
6BOH|1|NC|A|58
6BOH|1|NC|A|59
6BOH|1|NC|U|60
6BOH|1|NC|C|61
6BOH|1|NC|C|62
6BOH|1|NC|G|63
6BOH|1|NC|G|64
Current chains
- Chain NC
- tRNA
Nearby chains
- Chain CC
- 50S ribosomal protein L27
- Chain GB
- Large subunit ribosomal RNA; LSU rRNA
- Chain MB
- 50S ribosomal protein L5
- Chain SB
- 50S ribosomal protein L16
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