HL_6BOH_235
3D structure
- PDB id
- 6BOH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CUGCAACCCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6BOH_235 not in the Motif Atlas
- Homologous match to HL_4LFB_029
- Geometric discrepancy: 0.2204
- The information below is about HL_4LFB_029
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_02887.3
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6BOH|1|A|C|1314
6BOH|1|A|U|1315
6BOH|1|A|G|1316
6BOH|1|A|C|1317
6BOH|1|A|A|1318
6BOH|1|A|A|1319
6BOH|1|A|C|1320
6BOH|1|A|C|1321
6BOH|1|A|C|1322
6BOH|1|A|G|1323
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain CB
- 30S ribosomal protein S19
- Chain WA
- 30S ribosomal protein S13
- Chain XA
- 30S ribosomal protein S14 type Z
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