HL_6BOH_239

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUGCAACCCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOH_239 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.22

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6BOH|1|FB|C|1314
6BOH|1|FB|U|1315
6BOH|1|FB|G|1316
6BOH|1|FB|C|1317
6BOH|1|FB|A|1318
6BOH|1|FB|A|1319
6BOH|1|FB|C|1320
6BOH|1|FB|C|1321
6BOH|1|FB|C|1322
6BOH|1|FB|G|1323

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain BD

30S ribosomal protein S13

Chain CD

30S ribosomal protein S14 type Z

Chain HD

30S ribosomal protein S19