HL_6BOK_041

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

6BOK|1|B|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOK_041 not in the Motif Atlas

Homologous match to HL_7RQB_010

Geometric discrepancy: 0.0877

The information below is about HL_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

6BOK|1|B|U|305
6BOK|1|B|U|306
6BOK|1|B|G|307
6BOK|1|B|G|308
6BOK|1|B|G|309
6BOK|1|B|A|310
6BOK|1|B|A|311
6BOK|1|B|G|312

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein L24