HL_6BOK_064

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

6BOK|1|B|G|1325, 6BOK|1|B|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOK_064 not in the Motif Atlas

Homologous match to HL_7RQB_034

Geometric discrepancy: 0.0807

The information below is about HL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

6BOK|1|B|G|1324
6BOK|1|B|G|1325
6BOK|1|B|U|1326
6BOK|1|B|C|1327
6BOK|1|B|G|1328
6BOK|1|B|U|1329
6BOK|1|B|C|1330

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L17

Chain T

50S ribosomal protein L22