HL_6BOK_076

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

6BOK|1|B|A|1780, 6BOK|1|B|C|1781, 6BOK|1|B|C|1782, 6BOK|1|B|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOK_076 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.0923

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6BOK|1|B|U|1777
6BOK|1|B|U|1778
6BOK|1|B|U|1779
6BOK|1|B|A|1780
6BOK|1|B|C|1781
6BOK|1|B|C|1782
6BOK|1|B|A|1783
6BOK|1|B|A|1784
6BOK|1|B|A|1785
6BOK|1|B|A|1786
6BOK|1|B|A|1787

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L2

Chain EA

50S ribosomal protein L34

Chain T

50S ribosomal protein L22