HL_6BOK_088

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CCUGCAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOK_088 not in the Motif Atlas

Homologous match to HL_7RQB_057

Geometric discrepancy: 0.0521

The information below is about HL_7RQB_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

6BOK|1|B|C|2355
6BOK|1|B|C|2356
6BOK|1|B|U|2357
6BOK|1|B|G|2358
6BOK|1|B|C|2359
6BOK|1|B|A|2360
6BOK|1|B|A|2361
6BOK|1|B|G|2362

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain FA

50S ribosomal protein L35

Chain M

50S ribosomal protein L15

Chain X

50S ribosomal protein L27