HL_6BOK_093

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

C(2MU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 2MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOK_093 not in the Motif Atlas

Homologous match to HL_5J7L_195

Geometric discrepancy: 0.131

The information below is about HL_5J7L_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6BOK|1|B|C|2551
6BOK|1|B|2MU|2552
6BOK|1|B|G|2553
6BOK|1|B|U|2554
6BOK|1|B|U|2555
6BOK|1|B|C|2556
6BOK|1|B|G|2557

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain GD

Peptide chain release factor 1