HL_6BOK_116

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6BOK|1|DB|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOK_116 not in the Motif Atlas

Geometric match to HL_5Y85_004

Geometric discrepancy: 0.1017

The information below is about HL_5Y85_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

6BOK|1|DB|C|419
6BOK|1|DB|U|420
6BOK|1|DB|U|421
6BOK|1|DB|C|422
6BOK|1|DB|G|423
6BOK|1|DB|G|424

Current chains

Chain DB

16S ribosomal RNA

Nearby chains

Chain NC

30S ribosomal protein S3

Chain OC

30S ribosomal protein S4