HL_6BOK_136

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CGG(MA6)(MA6)G

Length

6 nucleotides

Bulged bases

6BOK|1|DB|G|1517

QA status

Modified nucleotides: MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOK_136 not in the Motif Atlas

Geometric match to HL_4V88_222

Geometric discrepancy: 0.1428

The information below is about HL_4V88_222

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6BOK|1|DB|C|1515
6BOK|1|DB|G|1516
6BOK|1|DB|G|1517
6BOK|1|DB|MA6|1518
6BOK|1|DB|MA6|1519
6BOK|1|DB|G|1520

Current chains

Chain DB

16S ribosomal RNA

Nearby chains

Chain EB

Large subunit ribosomal RNA; LSU rRNA