HL_6BOK_143

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

6BOK|1|EB|A|229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOK_143 not in the Motif Atlas

Homologous match to HL_7RQB_007

Geometric discrepancy: 0.2299

The information below is about HL_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02862.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

6BOK|1|EB|A|225
6BOK|1|EB|G|226
6BOK|1|EB|A|227
6BOK|1|EB|A|228
6BOK|1|EB|A|229
6BOK|1|EB|U|230

Current chains

Chain EB

23S ribosomal RNA

Nearby chains

Chain PB

50S ribosomal protein L15