HL_6BOK_190

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

6BOK|1|EB|A|2268, 6BOK|1|EB|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOK_190 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0859

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6BOK|1|EB|C|2264
6BOK|1|EB|U|2265
6BOK|1|EB|A|2266
6BOK|1|EB|A|2267
6BOK|1|EB|A|2268
6BOK|1|EB|A|2269
6BOK|1|EB|G|2270
6BOK|1|EB|G|2271
6BOK|1|EB|U|2272
6BOK|1|EB|A|2273
6BOK|1|EB|A|2274
6BOK|1|EB|C|2275
6BOK|1|EB|G|2276

Current chains

Chain EB

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L27

Chain QB

50S ribosomal protein L16