HL_6BOK_215
3D structure
- PDB id
- 6BOK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.55 Å
Loop
- Sequence
- G(5MC)UCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- 6BOK|1|LC|U|33
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6BOK_215 not in the Motif Atlas
- Homologous match to HL_5E81_212
- Geometric discrepancy: 0.098
- The information below is about HL_5E81_212
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
6BOK|1|LC|G|31
6BOK|1|LC|5MC|32
6BOK|1|LC|U|33
6BOK|1|LC|C|34
6BOK|1|LC|A|35
6BOK|1|LC|U|36
6BOK|1|LC|A|37
6BOK|1|LC|A|38
6BOK|1|LC|C|39
Current chains
- Chain LC
- 16S ribosomal RNA
Nearby chains
- Chain DB
- Small subunit ribosomal RNA; SSU rRNA
- Chain GB
- Small subunit ribosomal RNA fragment; SSU rRNA fragment
- Chain HD
- Peptide chain release factor 1
- Chain KC
- mRNA
- Chain TC
- 30S ribosomal protein S9
Coloring options: