HL_6BU8_003

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

6BU8|1|01|A|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BU8_003 not in the Motif Atlas

Homologous match to HL_5J7L_136

Geometric discrepancy: 0.1296

The information below is about HL_5J7L_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82710.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6BU8|1|01|G|123
6BU8|1|01|G|124
6BU8|1|01|A|125
6BU8|1|01|A|126
6BU8|1|01|A|127
6BU8|1|01|C|128

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 22

50S ribosomal protein L23

Chain 32

50S ribosomal protein L34