HL_6BU8_010

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

6BU8|1|01|G|329, 6BU8|1|01|A|330, 6BU8|1|01|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BU8_010 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.176

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

6BU8|1|01|G|327
6BU8|1|01|U|328
6BU8|1|01|G|329
6BU8|1|01|A|330
6BU8|1|01|C|331
6BU8|1|01|A|332
6BU8|1|01|G|333
6BU8|1|01|C|334
6BU8|1|01|C|335

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 06

50S ribosomal protein L4

Chain 23

50S ribosomal protein L24