HL_6BU8_012

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6BU8|1|01|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BU8_012 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1048

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6BU8|1|01|G|410
6BU8|1|01|G|411
6BU8|1|01|A|412
6BU8|1|01|C|413
6BU8|1|01|C|414
6BU8|1|01|A|415
6BU8|1|01|U|416
6BU8|1|01|C|417

Current chains

Chain 01

23S ribosomal RNA

Nearby chains