HL_6BU8_047
3D structure
- PDB id
- 6BU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with S1 domains 1 and 2 (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUAACUAUAAC
- Length
- 11 nucleotides
- Bulged bases
- 6BU8|1|01|A|1913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6BU8_047 not in the Motif Atlas
- Geometric match to HL_5TBW_049
- Geometric discrepancy: 0.3191
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6BU8|1|01|G|1910
6BU8|1|01|U|1911
6BU8|1|01|A|1912
6BU8|1|01|A|1913
6BU8|1|01|C|1914
6BU8|1|01|U|1915
6BU8|1|01|A|1916
6BU8|1|01|U|1917
6BU8|1|01|A|1918
6BU8|1|01|A|1919
6BU8|1|01|C|1920
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain V
- mRNA
- Chain W
- Transfer RNA; tRNA
- Chain Y
- Transfer RNA; tRNA
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