HL_6BU8_078

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BU8_078 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1732

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6BU8|1|A|A|320
6BU8|1|A|A|321
6BU8|1|A|C|322
6BU8|1|A|U|323
6BU8|1|A|G|324
6BU8|1|A|A|325
6BU8|1|A|G|326
6BU8|1|A|A|327
6BU8|1|A|C|328
6BU8|1|A|A|329
6BU8|1|A|C|330
6BU8|1|A|G|331
6BU8|1|A|G|332
6BU8|1|A|U|333

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20