HL_6BU8_088

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

6BU8|1|A|U|842, 6BU8|1|A|G|844, 6BU8|1|A|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BU8_088 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3363

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6BU8|1|A|C|840
6BU8|1|A|C|841
6BU8|1|A|U|842
6BU8|1|A|U|843
6BU8|1|A|G|844
6BU8|1|A|A|845
6BU8|1|A|G|846

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain R

30S ribosomal protein S18