HL_6BUW_047

3D structure

PDB id

6BUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

6BUW|1|RA|G|329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BUW_047 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1158

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

6BUW|1|RA|G|327
6BUW|1|RA|U|328
6BUW|1|RA|G|329
6BUW|1|RA|A|330
6BUW|1|RA|A|331
6BUW|1|RA|A|332
6BUW|1|RA|G|333
6BUW|1|RA|C|334
6BUW|1|RA|C|335

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RY

50S ribosomal protein L24