HL_6BUW_221

3D structure

PDB id

6BUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCGCGAAAGCGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BUW_221 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3586

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

6BUW|1|XA|C|1162
6BUW|1|XA|C|1163
6BUW|1|XA|G|1164
6BUW|1|XA|C|1165
6BUW|1|XA|G|1166
6BUW|1|XA|A|1167
6BUW|1|XA|A|1169
6BUW|1|XA|A|1170
6BUW|1|XA|G|1171
6BUW|1|XA|C|1172
6BUW|1|XA|G|1173
6BUW|1|XA|G|1174

Current chains

Chain XA

16S rRNA

Nearby chains

Chain QJ

30S ribosomal protein S10

Chain XB

30S ribosomal protein S2

Chain XG

30S ribosomal protein S7