HL_6BY1_008

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BY1_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1916

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6BY1|1|AA|A|320
6BY1|1|AA|A|321
6BY1|1|AA|C|322
6BY1|1|AA|U|323
6BY1|1|AA|G|324
6BY1|1|AA|A|325
6BY1|1|AA|G|326
6BY1|1|AA|A|327
6BY1|1|AA|C|328
6BY1|1|AA|A|329
6BY1|1|AA|C|330
6BY1|1|AA|G|331
6BY1|1|AA|G|332
6BY1|1|AA|U|333

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20