6BY1 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6BY1_001 | 1/AA/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_6BY1_002 | 1/AA/80:89 | No text annotation | geometric HL_8C3A_006 NA | |
| HL_6BY1_003 | 1/AA/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.8 | |
| HL_6BY1_004 | 1/AA/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.8 | |
| HL_6BY1_006 | 1/AA/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_6BY1_007 | 1/AA/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.8 | |
| HL_6BY1_008 | 1/AA/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_6BY1_009 | 1/AA/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_6BY1_010 | 1/AA/379:384 | GNRA | homologous HL_5J7L_010 HL_37824.8 | |
| HL_6BY1_011 | 1/AA/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_6BY1_012 | 1/AA/462:470 | GNRA wlth extra near cWW | homologous HL_5J7L_012 HL_81538.2 | |
| HL_6BY1_013 | 1/AA/522:527 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_6BY1_014 | 1/AA/617:623 | GNRA-like with tWH | homologous HL_4LFB_014 HL_10453.3 | |
| HL_6BY1_015 | 1/AA/689:698 | No text annotation | homologous HL_6CZR_086 NA | |
| HL_6BY1_016 | 1/AA/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.8 | |
| HL_6BY1_017 | 1/AA/786:796 | No text annotation | homologous HL_6CZR_088 NA | |
| HL_6BY1_018 | 1/AA/840:846 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6BY1_019 | 1/AA/862:867 | GNRA | homologous HL_5J7L_019 HL_37824.8 | |
| HL_6BY1_020 | 1/AA/897:902 | GNRA | homologous HL_6CZR_091 NA | |
| HL_6BY1_021 | 1/AA/963:972 | No text annotation | homologous HL_5J7L_021 HL_50779.4 | |
| HL_6BY1_022 | 1/AA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.8 | |
| HL_6BY1_023 | 1/AA/1028:1033 | No text annotation | ||
| HL_6BY1_024 | 1/AA/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.8 | |
| HL_6BY1_224 | 1/AA/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_6BY1_026 | 1/AA/1134:1140 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_6BY1_027 | 1/AA/1165:1171 | GNRA | homologous HL_5J7L_026 HL_93535.1 | |
| HL_6BY1_028 | 1/AA/1265:1270 | GNRA | homologous HL_5J7L_027 HL_37824.8 | |
| HL_6BY1_029 | 1/AA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_6BY1_030 | 1/AA/1356:1366 | No text annotation | homologous HL_5J7L_029 HL_06226.4 | |
| HL_6BY1_031 | 1/AA/1449:1454 | UNCG | homologous HL_4LFB_031 HL_34617.5 | |
| HL_6BY1_032 | 1/AA/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_6BY1_033 | 1/AV/13:22 | No text annotation | homologous HL_3KFU_004 NA | |
| HL_6BY1_034 | 1/AV/31:39 | tRNA anticodon loop | homologous HL_4WT8_216 HL_06059.7 | |
| HL_6BY1_035 | 1/AV/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6UFG_008 HL_28252.9 | |
| HL_6BY1_036 | 1/AW/13:22 | No text annotation | homologous HL_6PMO_003 NA | |
| HL_6BY1_037 | 1/AW/31:39 | tRNA anticodon loop | homologous HL_4WT8_216 HL_06059.7 | |
| HL_6BY1_038 | 1/AW/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1QU2_003 HL_28252.9 | |
| HL_6BY1_040 | 1/AY/27:43 | No text annotation | ||
| HL_6BY1_041 | 1/AY/53:61 | No text annotation | homologous HL_5E7K_220 NA | |
| HL_6BY1_042 | 1/BA/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_6BY1_043 | 1/BA/82:87 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_6BY1_044 | 1/BA/158:163 | GNRA | homologous HL_4LFB_003 HL_37824.8 | |
| HL_6BY1_045 | 1/BA/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.8 | |
| HL_6BY1_046 | 1/BA/207:212 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_6BY1_047 | 1/BA/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_6BY1_048 | 1/BA/296:301 | GNRA | homologous HL_6CZR_078 NA | |
| HL_6BY1_049 | 1/BA/319:334 | No text annotation | ||
| HL_6BY1_050 | 1/BA/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_6BY1_051 | 1/BA/379:384 | GNRA | homologous HL_6CZR_081 NA | |
| HL_6BY1_052 | 1/BA/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_6BY1_053 | 1/BA/462:470 | GNRA wlth extra near cWW | homologous HL_5J7L_012 HL_81538.2 | |
| HL_6BY1_054 | 1/BA/522:527 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_6BY1_055 | 1/BA/617:623 | GNRA-like with tWH | homologous HL_5J7L_014 HL_10453.3 | |
| HL_6BY1_056 | 1/BA/689:698 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_6BY1_057 | 1/BA/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.8 | |
| HL_6BY1_058 | 1/BA/786:796 | No text annotation | homologous HL_6CZR_088 NA | |
| HL_6BY1_059 | 1/BA/840:846 | No text annotation | geometric HL_5TBW_044 NA | |
| HL_6BY1_060 | 1/BA/862:867 | GNRA | homologous HL_5J7L_019 HL_37824.8 | |
| HL_6BY1_061 | 1/BA/897:902 | GNRA | homologous HL_6CZR_091 NA | |
| HL_6BY1_062 | 1/BA/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_6BY1_063 | 1/BA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.8 | |
| HL_6BY1_064 | 1/BA/1028:1033 | No text annotation | ||
| HL_6BY1_065 | 1/BA/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.8 | |
| HL_6BY1_066 | 1/BA/1089:1096 | T-loop related | homologous HL_6CZR_096 NA | |
| HL_6BY1_067 | 1/BA/1134:1140 | No text annotation | homologous HL_4LFB_026 HL_87954.2 | |
| HL_6BY1_226 | 1/BA/1165:1171 | GNRA | homologous HL_5J7L_026 HL_93535.1 | |
| HL_6BY1_069 | 1/BA/1265:1270 | GNRA | homologous HL_4LFB_028 HL_37824.8 | |
| HL_6BY1_070 | 1/BA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_6BY1_071 | 1/BA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_6BY1_072 | 1/BA/1449:1454 | UNCG | homologous HL_4LFB_031 HL_34617.5 | |
| HL_6BY1_073 | 1/BA/1515:1520 | GNRA | homologous HL_4LFB_032 HL_37824.8 | |
| HL_6BY1_074 | 1/BV/13:22 | No text annotation | homologous HL_3WFS_001 NA | |
| HL_6BY1_075 | 1/BV/31:39 | tRNA anticodon loop | homologous HL_5IBB_210 HL_06059.7 | |
| HL_6BY1_076 | 1/BV/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6UFG_008 HL_28252.9 | |
| HL_6BY1_077 | 1/BW/13:22 | No text annotation | homologous HL_6PMO_003 NA | |
| HL_6BY1_078 | 1/BW/31:39 | tRNA anticodon loop | homologous HL_6UFM_002 HL_06059.7 | |
| HL_6BY1_079 | 1/BW/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6UFG_008 HL_28252.9 | |
| HL_6BY1_080 | 1/CA/59:68 | No text annotation | homologous HL_5J7L_134 HL_35677.3 | |
| HL_6BY1_081 | 1/CA/87:95 | No text annotation | homologous HL_5J7L_135 HL_80241.1 | |
| HL_6BY1_082 | 1/CA/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
| HL_6BY1_083 | 1/CA/137:142 | UNCG | geometric HL_6QN3_001 HL_34617.5 | |
| HL_6BY1_084 | 1/CA/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_6BY1_085 | 1/CA/194:201 | No text annotation | homologous HL_4WF9_006 HL_30068.2 | |
| HL_6BY1_086 | 1/CA/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
| HL_6BY1_087 | 1/CA/246:252 | No text annotation | homologous HL_4WF9_008 HL_37369.2 | |
| HL_6BY1_088 | 1/CA/305:312 | T-loop with 1 bulged base | homologous HL_7A0S_010 HL_01609.3 | |
| HL_6BY1_089 | 1/CA/319:323 | No text annotation | homologous HL_7A0S_011 HL_75660.5 | |
| HL_6BY1_090 | 1/CA/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_6BY1_091 | 1/CA/382:392 | No text annotation | homologous HL_5J7L_145 HL_91503.7 | |
| HL_6BY1_092 | 1/CA/410:417 | Pseudoknot geometry | homologous HL_7A0S_014 HL_30680.3 | |
| HL_6BY1_093 | 1/CA/462:467 | GNRA | homologous HL_7RQB_015 NA | |
| HL_6BY1_094 | 1/CA/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.8 | |
| HL_6BY1_227 | 1/CA/542:551 | No text annotation | ||
| HL_6BY1_095 | 1/CA/544:549 | No text annotation | homologous HL_7RQB_017 NA | |
| HL_6BY1_096 | 1/CA/566:575 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_150 HL_28252.9 | |
| HL_6BY1_097 | 1/CA/611:617 | No text annotation | homologous HL_5J7L_151 HL_80922.2 | |
| HL_6BY1_098 | 1/CA/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.8 | |
| HL_6BY1_099 | 1/CA/641:647 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_6BY1_100 | 1/CA/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
| HL_6BY1_101 | 1/CA/744:753 | No text annotation | homologous HL_4WF9_023 HL_88205.2 | |
| HL_6BY1_102 | 1/CA/779:785 | UNCG variation | homologous HL_7A0S_023 HL_53890.2 | |
| HL_6BY1_103 | 1/CA/826:831 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_6BY1_104 | 1/CA/885:891 | No text annotation | ||
| HL_6BY1_105 | 1/CA/955:962 | GNRA | homologous HL_7A0S_026 HL_37824.8 | |
| HL_6BY1_106 | 1/CA/978:985 | No text annotation | homologous HL_7A0S_027 HL_42998.2 | |
| HL_6BY1_107 | 1/CA/1064:1074 | No text annotation | ||
| HL_6BY1_108 | 1/CA/1090:1101 | No text annotation | ||
| HL_6BY1_109 | 1/CA/1172:1177 | No text annotation | geometric HL_4V88_198 NA | |
| HL_6BY1_110 | 1/CA/1222:1227 | GNRA | homologous HL_5J7L_164 HL_37824.8 | |
| HL_6BY1_111 | 1/CA/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.9 | |
| HL_6BY1_112 | 1/CA/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 HL_57176.2 | |
| HL_6BY1_113 | 1/CA/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
| HL_6BY1_114 | 1/CA/1389:1398 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
| HL_6BY1_115 | 1/CA/1451:1459 | Mini UNCG | geometric HL_1ZBH_001 HL_56334.1 | |
| HL_6BY1_116 | 1/CA/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
| HL_6BY1_117 | 1/CA/1533:1538 | UNCG | homologous HL_5J7L_171 HL_34617.5 | |
| HL_6BY1_118 | 1/CA/1565:1568 | Mini UNCG | homologous HL_5J7L_172 HL_48778.2 | |
| HL_6BY1_119 | 1/CA/1612:1619 | No text annotation | homologous HL_4WF9_038 HL_89567.2 | |
| HL_6BY1_233 | 1/CA/1630:1636 | GNRA | homologous HL_5J7L_174 HL_37824.8 | |
| HL_6BY1_121 | 1/CA/1691:1696 | No text annotation | homologous HL_7RQB_042 NA | |
| HL_6BY1_122 | 1/CA/1728:1731 | No text annotation | homologous HL_5J7L_176 HL_32346.4 | |
| HL_6BY1_123 | 1/CA/1752:1756 | No text annotation | homologous HL_5J7L_177 HL_80709.3 | |
| HL_6BY1_124 | 1/CA/1777:1787 | No text annotation | homologous HL_4WF9_043 HL_01962.2 | |
| HL_6BY1_125 | 1/CA/1806:1811 | GNRA related | homologous HL_5J7L_179 HL_04783.2 | |
| HL_6BY1_126 | 1/CA/1868:1873 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6BY1_127 | 1/CA/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_6BY1_128 | 1/CA/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_6BY1_129 | 1/CA/1992:1996 | No text annotation | ||
| HL_6BY1_130 | 1/CA/2027:2036 | No text annotation | homologous HL_4WF9_047 HL_61996.3 | |
| HL_6BY1_132 | 1/CA/2209:2215 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
| HL_6BY1_133 | 1/CA/2248:2256 | No text annotation | homologous HL_7A0S_052 HL_85367.2 | |
| HL_6BY1_134 | 1/CA/2264:2276 | No text annotation | homologous HL_5J7L_187 HL_91939.2 | |
| HL_6BY1_135 | 1/CA/2303:2313 | No text annotation | homologous HL_7RQB_055 NA | |
| HL_6BY1_136 | 1/CA/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 HL_93324.4 | |
| HL_6BY1_137 | 1/CA/2356:2361 | GNRA | homologous HL_5J7L_190 HL_37824.8 | |
| HL_6BY1_138 | 1/CA/2374:2379 | GNRA | homologous HL_5J7L_191 HL_37824.8 | |
| HL_6BY1_139 | 1/CA/2404:2413 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_6BY1_234 | 1/CA/2471:2479 | No text annotation | homologous HL_4WF9_056 HL_32735.2 | |
| HL_6BY1_141 | 1/CA/2528:2535 | GNRA variation | homologous HL_5J7L_194 HL_31585.4 | |
| HL_6BY1_142 | 1/CA/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_6BY1_143 | 1/CA/2594:2599 | GNRA | homologous HL_4WF9_059 HL_37824.8 | |
| HL_6BY1_144 | 1/CA/2658:2663 | GNRA | homologous HL_4WF9_060 HL_37824.8 | |
| HL_6BY1_145 | 1/CA/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 HL_65794.5 | |
| HL_6BY1_146 | 1/CA/2745:2759 | No text annotation | homologous HL_4WF9_062 HL_74055.2 | |
| HL_6BY1_147 | 1/CA/2796:2799 | Mini UNCG | geometric HL_4V88_192 NA | |
| HL_6BY1_148 | 1/CA/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_6BY1_149 | 1/CA/2856:2861 | GNRA | homologous HL_7A0S_068 HL_37824.8 | |
| HL_6BY1_150 | 1/CB/38:44 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_6BY1_151 | 1/CB/86:90 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 | |
| HL_6BY1_152 | 1/DA/59:68 | No text annotation | homologous HL_5J7L_134 HL_35677.3 | |
| HL_6BY1_153 | 1/DA/87:95 | No text annotation | homologous HL_5J7L_135 HL_80241.1 | |
| HL_6BY1_154 | 1/DA/123:128 | No text annotation | homologous HL_5J7L_136 HL_82710.2 | |
| HL_6BY1_155 | 1/DA/137:142 | UNCG | geometric HL_6CK5_001 HL_34617.5 | |
| HL_6BY1_156 | 1/DA/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_6BY1_157 | 1/DA/194:201 | No text annotation | geometric HL_7RQB_006 NA | |
| HL_6BY1_158 | 1/DA/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
| HL_6BY1_159 | 1/DA/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_6BY1_160 | 1/DA/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 HL_01609.3 | |
| HL_6BY1_161 | 1/DA/319:323 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_6BY1_162 | 1/DA/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_6BY1_163 | 1/DA/382:392 | No text annotation | homologous HL_5J7L_145 HL_91503.7 | |
| HL_6BY1_164 | 1/DA/410:417 | Pseudoknot geometry | homologous HL_7A0S_014 HL_30680.3 | |
| HL_6BY1_165 | 1/DA/462:467 | GNRA | homologous HL_7RQB_015 NA | |
| HL_6BY1_166 | 1/DA/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.8 | |
| HL_6BY1_229 | 1/DA/542:551 | No text annotation | ||
| HL_6BY1_167 | 1/DA/544:549 | No text annotation | homologous HL_5J7L_149 HL_09452.1 | |
| HL_6BY1_168 | 1/DA/566:575 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_150 HL_28252.9 | |
| HL_6BY1_169 | 1/DA/611:617 | No text annotation | homologous HL_5J7L_151 HL_80922.2 | |
| HL_6BY1_170 | 1/DA/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.8 | |
| HL_6BY1_171 | 1/DA/641:647 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_6BY1_172 | 1/DA/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
| HL_6BY1_173 | 1/DA/744:753 | No text annotation | homologous HL_4WF9_023 HL_88205.2 | |
| HL_6BY1_174 | 1/DA/779:785 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_6BY1_175 | 1/DA/826:831 | No text annotation | homologous HL_5J7L_157 HL_55195.3 | |
| HL_6BY1_176 | 1/DA/885:891 | No text annotation | ||
| HL_6BY1_177 | 1/DA/955:962 | GNRA | homologous HL_7A0S_026 HL_37824.8 | |
| HL_6BY1_178 | 1/DA/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_6BY1_235 | 1/DA/1063:1075 | No text annotation | ||
| HL_6BY1_180 | 1/DA/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_81538.2 | |
| HL_6BY1_181 | 1/DA/1172:1177 | No text annotation | geometric HL_4V88_198 NA | |
| HL_6BY1_182 | 1/DA/1222:1227 | GNRA | homologous HL_5J7L_164 HL_37824.8 | |
| HL_6BY1_183 | 1/DA/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.9 | |
| HL_6BY1_184 | 1/DA/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 HL_57176.2 | |
| HL_6BY1_185 | 1/DA/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.8 | |
| HL_6BY1_186 | 1/DA/1389:1398 | No text annotation | homologous HL_4WF9_035 HL_81545.2 | |
| HL_6BY1_187 | 1/DA/1451:1459 | Mini UNCG with extended bulge | homologous HL_5J7L_169 HL_22622.1 | |
| HL_6BY1_236 | 1/DA/1489:1500 | No text annotation | ||
| HL_6BY1_188 | 1/DA/1491:1499 | No text annotation | geometric HL_7RQB_011 NA | |
| HL_6BY1_189 | 1/DA/1533:1538 | UNCG | homologous HL_5J7L_171 HL_34617.5 | |
| HL_6BY1_190 | 1/DA/1565:1568 | Mini UNCG | homologous HL_5J7L_172 HL_48778.2 | |
| HL_6BY1_191 | 1/DA/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_6BY1_192 | 1/DA/1629:1637 | GNRA with extra cWW | homologous HL_4WF9_039 HL_20167.2 | |
| HL_6BY1_193 | 1/DA/1691:1696 | UNCG | geometric HL_4PDB_001 HL_34617.5 | |
| HL_6BY1_194 | 1/DA/1728:1731 | No text annotation | geometric HL_6U8D_003 HL_32346.4 | |
| HL_6BY1_195 | 1/DA/1752:1756 | No text annotation | homologous HL_4WF9_042 HL_80709.3 | |
| HL_6BY1_196 | 1/DA/1777:1787 | No text annotation | homologous HL_4WF9_043 HL_01962.2 | |
| HL_6BY1_197 | 1/DA/1806:1811 | GNRA related | homologous HL_5J7L_179 HL_04783.2 | |
| HL_6BY1_198 | 1/DA/1868:1873 | GNRA related | geometric HL_3OXE_002 HL_04783.2 | |
| HL_6BY1_199 | 1/DA/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_6BY1_200 | 1/DA/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_6BY1_201 | 1/DA/2027:2036 | No text annotation | homologous HL_4WF9_047 HL_61996.3 | |
| HL_6BY1_203 | 1/DA/2209:2215 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
| HL_6BY1_204 | 1/DA/2248:2256 | No text annotation | homologous HL_7A0S_052 HL_85367.2 | |
| HL_6BY1_205 | 1/DA/2264:2276 | No text annotation | homologous HL_5J7L_187 HL_91939.2 | |
| HL_6BY1_206 | 1/DA/2303:2313 | No text annotation | homologous HL_7RQB_055 NA | |
| HL_6BY1_207 | 1/DA/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 HL_93324.4 | |
| HL_6BY1_208 | 1/DA/2356:2361 | GNRA | homologous HL_5J7L_190 HL_37824.8 | |
| HL_6BY1_209 | 1/DA/2374:2379 | GNRA | homologous HL_4WF9_054 HL_37824.8 | |
| HL_6BY1_210 | 1/DA/2404:2413 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_6BY1_211 | 1/DA/2471:2479 | No text annotation | homologous HL_4WF9_056 HL_32735.2 | |
| HL_6BY1_212 | 1/DA/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_6BY1_213 | 1/DA/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_6BY1_214 | 1/DA/2594:2599 | GNRA | homologous HL_4WF9_059 HL_37824.8 | |
| HL_6BY1_215 | 1/DA/2658:2663 | GNRA | homologous HL_5J7L_197 HL_37824.8 | |
| HL_6BY1_216 | 1/DA/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 HL_65794.5 | |
| HL_6BY1_217 | 1/DA/2745:2759 | No text annotation | homologous HL_4WF9_062 HL_74055.2 | |
| HL_6BY1_218 | 1/DA/2796:2799 | No text annotation | geometric HL_6U8D_003 HL_32346.4 | |
| HL_6BY1_219 | 1/DA/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_6BY1_220 | 1/DA/2856:2861 | GNRA | homologous HL_7A0S_068 HL_37824.8 | |
| HL_6BY1_232 | 1/DB/33:49 | No text annotation | ||
| HL_6BY1_221 | 1/DB/38:44 | No text annotation | homologous HL_5J7L_203 HL_47787.2 | |
| HL_6BY1_222 | 1/DB/86:90 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6BY1_005 | No text annotation | ||
| HL_6BY1_223 | No text annotation | ||
| HL_6BY1_025 | No text annotation | ||
| HL_6BY1_225 | No text annotation | ||
| HL_6BY1_039 | No text annotation | ||
| HL_6BY1_068 | Anticodon loop related | ||
| HL_6BY1_120 | GNRA with extra cWW | ||
| HL_6BY1_131 | No text annotation | ||
| HL_6BY1_228 | No text annotation | ||
| HL_6BY1_140 | No text annotation | ||
| HL_6BY1_179 | No text annotation | ||
| HL_6BY1_230 | No text annotation | ||
| HL_6BY1_202 | No text annotation | ||
| HL_6BY1_231 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6BY1_001 | 1/AA/30:32, 1/AA/552:553 | Single bulged G | homologous IL_5J7L_001 IL_00225.14 | |
| IL_6BY1_002 | 1/AA/44:45, 1/AA/396:398 | Single bulged A | homologous IL_5J7L_002 IL_31462.7 | |
| IL_6BY1_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation | homologous IL_5J7L_003 IL_14177.2 | |
| IL_6BY1_004 | 1/AA/54:56, 1/AA/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_6BY1_005 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.5 | |
| IL_6BY1_006 | 1/AA/66:69, 1/AA/99:103 | No text annotation | geometric IL_1U6B_004 IL_64231.5 | |
| IL_6BY1_007 | 1/AA/70:74, 1/AA/96:98 | No text annotation | ||
| IL_6BY1_008 | 1/AA/75:77, 1/AA/92:95 | Single bulged G, near cWW | homologous IL_5J7L_008 NA | |
| IL_6BY1_009 | 1/AA/127:131, 1/AA/231:234 | Tandem non-canonical cWW pairs | geometric IL_1GID_008 NA | |
| IL_6BY1_010 | 1/AA/132:136, 1/AA/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_6BY1_011 | 1/AA/147:154, 1/AA/167:175 | No text annotation | ||
| IL_6BY1_012 | 1/AA/203:206, 1/AA/213:214 | No text annotation | ||
| IL_6BY1_013 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 IL_46174.3 | |
| IL_6BY1_014 | 1/AA/249:252, 1/AA/274:275 | No text annotation | homologous IL_5J7L_015 IL_47074.2 | |
| IL_6BY1_015 | 1/AA/292:293, 1/AA/304:308 | C-loop | homologous IL_6CZR_125 NA | |
| IL_6BY1_016 | 1/AA/367:369, 1/AA/392:393 | Single bulged U | homologous IL_5J7L_017 IL_89505.4 | |
| IL_6BY1_017 | 1/AA/371:375, 1/AA/389:390 | C-loop | geometric IL_6CZR_127 NA | |
| IL_6BY1_018 | 1/AA/375:378, 1/AA/385:389 | No text annotation | ||
| IL_6BY1_019 | 1/AA/409:416, 1/AA/427:433 | No text annotation | homologous IL_5J7L_020 IL_28026.3 | |
| IL_6BY1_020 | 1/AA/440:442, 1/AA/492:497 | No text annotation | homologous IL_5J7L_021 IL_33323.1 | |
| IL_6BY1_021 | 1/AA/446:450, 1/AA/483:488 | tSH-tHW-tWW | geometric IL_5J7L_022 IL_88269.4 | |
| IL_6BY1_022 | 1/AA/450:454, 1/AA/479:483 | No text annotation | ||
| IL_6BY1_352 | 1/AA/450:455, 1/AA/477:483 | No text annotation | homologous IL_5J7L_023 IL_70801.1 | |
| IL_6BY1_023 | 1/AA/454:455, 1/AA/477:479 | No text annotation | ||
| IL_6BY1_024 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
| IL_6BY1_353 | 1/AA/514:521, 1/AA/528:537 | No text annotation | ||
| IL_6BY1_025 | 1/AA/515:521, 1/AA/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_6BY1_026 | 1/AA/569:575, 1/AA/880:881 | No text annotation | homologous IL_5J7L_026 IL_38186.6 | |
| IL_6BY1_027 | 1/AA/580:584, 1/AA/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_6BY1_404 | 1/AA/594:596, 1/AA/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_6BY1_029 | 1/AA/597:598, 1/AA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_6BY1_030 | 1/AA/605:612, 1/AA/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_6BY1_354 | 1/AA/654:655, 1/AA/751:754 | Major groove platform; stack outside cWW | geometric IL_6CZR_139 NA | |
| IL_6BY1_032 | 1/AA/658:659, 1/AA/746:748 | Single stack bend | homologous IL_5J7L_032 IL_26793.1 | |
| IL_6BY1_033 | 1/AA/662:666, 1/AA/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
| IL_6BY1_355 | 1/AA/673:677, 1/AA/713:717 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_49751.4 | |
| IL_6BY1_035 | 1/AA/684:688, 1/AA/699:706 | Kink-turn | geometric IL_7A0S_004 IL_94910.1 | |
| IL_6BY1_036 | 1/AA/774:778, 1/AA/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_6BY1_037 | 1/AA/779:783, 1/AA/799:803 | tSH-tHW-tHS | homologous IL_6CZR_145 NA | |
| IL_6BY1_038 | 1/AA/887:894, 1/AA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_6BY1_039 | 1/AA/922:923, 1/AA/1393:1395 | Single bulged A | homologous IL_6CZR_147 NA | |
| IL_6BY1_040 | 1/AA/925:927, 1/AA/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.14 | |
| IL_6BY1_405 | 1/AA/933:935, 1/AA/1380:1384 | Minor groove platform | geometric IL_4LFB_037 IL_47078.3 | |
| IL_6BY1_042 | 1/AA/953:954, 1/AA/1226:1228 | Minor groove platform | homologous IL_5J7L_042 IL_51454.3 | |
| IL_6BY1_043 | 1/AA/993:997, 1/AA/1044:1045 | Minor groove platform | homologous IL_5J7L_043 IL_47078.3 | |
| IL_6BY1_356 | 1/AA/998:999, 1/AA/1041:1043 | Single stack bend | homologous IL_5J7L_044 IL_26793.1 | |
| IL_6BY1_045 | 1/AA/1048:1050, 1/AA/1208:1209 | No text annotation | homologous IL_6CZR_152 NA | |
| IL_6BY1_046 | 1/AA/1052:1056, 1/AA/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_6BY1_358 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform | homologous IL_6CZR_155 NA | |
| IL_6BY1_048 | 1/AA/1060:1061, 1/AA/1195:1197 | Single bulged A | geometric IL_5J7L_049 IL_31462.7 | |
| IL_6BY1_049 | 1/AA/1061:1063, 1/AA/1193:1195 | Isolated non-canonical cWW pair | homologous IL_4LFB_047 IL_28037.2 | |
| IL_6BY1_050 | 1/AA/1124:1132, 1/AA/1142:1149 | No text annotation | ||
| IL_6BY1_051 | 1/AA/1158:1162, 1/AA/1174:1181 | No text annotation | ||
| IL_6BY1_052 | 1/AA/1247:1253, 1/AA/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
| IL_6BY1_053 | 1/AA/1255:1258, 1/AA/1277:1282 | 180 degree turn | homologous IL_5J7L_055 IL_11344.2 | |
| IL_6BY1_054 | 1/AA/1259:1263, 1/AA/1272:1276 | Double sheared with non-canonical cWW | homologous IL_5J7L_056 IL_17948.2 | |
| IL_6BY1_055 | 1/AA/1399:1401, 1/AA/1501:1504 | No text annotation | geometric IL_4V88_463 NA | |
| IL_6BY1_056 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_6BY1_057 | 1/AA/1405:1407, 1/AA/1494:1496 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_6BY1_058 | 1/AA/1407:1409, 1/AA/1491:1494 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_6BY1_059 | 1/AA/1412:1414, 1/AA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_6BY1_060 | 1/AA/1416:1419, 1/AA/1481:1484 | Double sheared | homologous IL_6CZR_169 NA | |
| IL_6BY1_061 | 1/AA/1430:1435, 1/AA/1466:1470 | Triple sheared related | homologous IL_5J7L_063 IL_80231.1 | |
| IL_6BY1_062 | 1/AA/1440:1442, 1/AA/1460:1461 | Single bulged A | geometric IL_7RQB_062 NA | |
| IL_6BY1_406 | 1/AA/1445:1448, 1/AA/1455:1457 | No text annotation | homologous IL_5J7L_065 IL_31531.3 | |
| IL_6BY1_407 | 1/BA/29:32, 1/BA/552:554 | Isolated non-canonical cWW pair | geometric IL_4AOB_005 IL_87907.2 | |
| IL_6BY1_066 | 1/BA/30:32, 1/BA/552:553 | Single bulged G | homologous IL_5J7L_001 IL_00225.14 | |
| IL_6BY1_067 | 1/BA/44:45, 1/BA/396:398 | Single bulged A | homologous IL_5J7L_002 IL_31462.7 | |
| IL_6BY1_068 | 1/BA/47:52, 1/BA/359:361 | No text annotation | geometric IL_5J7L_003 IL_14177.2 | |
| IL_6BY1_069 | 1/BA/54:56, 1/BA/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_6BY1_070 | 1/BA/63:69, 1/BA/99:104 | No text annotation | ||
| IL_6BY1_071 | 1/BA/70:73, 1/BA/97:98 | Minor groove platform | homologous IL_5J7L_007 IL_15052.4 | |
| IL_6BY1_361 | 1/BA/75:79, 1/BA/90:95 | Triple non-canonical cWW pairs | geometric IL_4LFB_065 IL_49751.4 | |
| IL_6BY1_073 | 1/BA/128:131, 1/BA/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 IL_57744.1 | |
| IL_6BY1_074 | 1/BA/132:136, 1/BA/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_6BY1_075 | 1/BA/147:153, 1/BA/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
| IL_6BY1_076 | 1/BA/203:206, 1/BA/213:214 | Minor groove platform | geometric IL_3MXH_005 IL_15052.4 | |
| IL_6BY1_077 | 1/BA/242:247, 1/BA/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 IL_46174.3 | |
| IL_6BY1_078 | 1/BA/249:252, 1/BA/274:275 | No text annotation | homologous IL_5J7L_015 IL_47074.2 | |
| IL_6BY1_079 | 1/BA/292:293, 1/BA/304:308 | C-loop | homologous IL_6CZR_125 NA | |
| IL_6BY1_080 | 1/BA/367:369, 1/BA/392:393 | Single bulged U | homologous IL_4LFB_014 IL_89505.4 | |
| IL_6BY1_081 | 1/BA/371:375, 1/BA/389:390 | C-loop | homologous IL_4LFB_015 IL_03109.3 | |
| IL_6BY1_082 | 1/BA/375:376, 1/BA/387:389 | Single bulged G | geometric IL_5J7L_019 IL_00225.14 | |
| IL_6BY1_083 | 1/BA/409:416, 1/BA/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_6BY1_084 | 1/BA/440:442, 1/BA/492:497 | Other IL | geometric IL_4PDB_001 IL_36516.3 | |
| IL_6BY1_085 | 1/BA/446:450, 1/BA/483:488 | tSH-tHW-tWW | homologous IL_5J7L_022 IL_88269.4 | |
| IL_6BY1_086 | 1/BA/450:455, 1/BA/477:483 | No text annotation | geometric IL_5J7L_023 IL_70801.1 | |
| IL_6BY1_087 | 1/BA/504:511, 1/BA/540:541 | SSU/LSU pseudoknot | homologous IL_6CZR_132 NA | |
| IL_6BY1_088 | 1/BA/515:521, 1/BA/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_6BY1_089 | 1/BA/569:575, 1/BA/880:881 | No text annotation | homologous IL_5J7L_026 IL_38186.6 | |
| IL_6BY1_090 | 1/BA/580:584, 1/BA/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_6BY1_408 | 1/BA/594:596, 1/BA/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_6BY1_092 | 1/BA/597:599, 1/BA/639:643 | No text annotation | homologous IL_6CZR_361 NA | |
| IL_6BY1_093 | 1/BA/605:612, 1/BA/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_6BY1_364 | 1/BA/654:655, 1/BA/751:754 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_50694.7 | |
| IL_6BY1_095 | 1/BA/658:660, 1/BA/745:748 | No text annotation | geometric IL_4P3T_002 NA | |
| IL_6BY1_096 | 1/BA/662:666, 1/BA/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
| IL_6BY1_365 | 1/BA/673:677, 1/BA/713:717 | Triple non-canonical cWW pairs | homologous IL_6CZR_409 NA | |
| IL_6BY1_098 | 1/BA/684:688, 1/BA/699:706 | Kink-turn | homologous IL_5J7L_035 IL_01488.3 | |
| IL_6BY1_099 | 1/BA/774:778, 1/BA/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_6BY1_100 | 1/BA/779:783, 1/BA/799:803 | tSH-tHW-tHS | homologous IL_6CZR_145 NA | |
| IL_6BY1_101 | 1/BA/887:894, 1/BA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_6BY1_102 | 1/BA/922:923, 1/BA/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.7 | |
| IL_6BY1_103 | 1/BA/925:927, 1/BA/1390:1391 | Single bulged G | homologous IL_6CZR_148 NA | |
| IL_6BY1_409 | 1/BA/933:935, 1/BA/1380:1384 | No text annotation | homologous IL_6CZR_410 NA | |
| IL_6BY1_105 | 1/BA/953:954, 1/BA/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_6BY1_106 | 1/BA/993:997, 1/BA/1044:1045 | Minor groove platform | homologous IL_5J7L_043 IL_47078.3 | |
| IL_6BY1_107 | 1/BA/998:999, 1/BA/1041:1043 | Single stack bend | homologous IL_5J7L_044 IL_26793.1 | |
| IL_6BY1_108 | 1/BA/1048:1050, 1/BA/1208:1209 | Single bulged U | homologous IL_5J7L_046 IL_89505.4 | |
| IL_6BY1_109 | 1/BA/1052:1057, 1/BA/1203:1206 | No text annotation | homologous IL_6CZR_365 NA | |
| IL_6BY1_110 | 1/BA/1057:1058, 1/BA/1199:1203 | Minor groove platform | geometric IL_6CZR_155 NA | |
| IL_6BY1_111 | 1/BA/1060:1061, 1/BA/1195:1197 | Single bulged A | geometric IL_5J7L_049 IL_31462.7 | |
| IL_6BY1_112 | 1/BA/1061:1063, 1/BA/1193:1195 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 IL_28037.2 | |
| IL_6BY1_113 | 1/BA/1124:1129, 1/BA/1143:1149 | No text annotation | ||
| IL_6BY1_114 | 1/BA/1129:1132, 1/BA/1142:1143 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
| IL_6BY1_115 | 1/BA/1158:1161, 1/BA/1175:1181 | No text annotation | geometric IL_4LFB_050 IL_42032.1 | |
| IL_6BY1_410 | 1/BA/1247:1253, 1/BA/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
| IL_6BY1_117 | 1/BA/1254:1258, 1/BA/1277:1283 | No text annotation | ||
| IL_6BY1_118 | 1/BA/1259:1263, 1/BA/1272:1276 | Double sheared with non-canonical cWW | homologous IL_5J7L_056 IL_17948.2 | |
| IL_6BY1_119 | 1/BA/1303:1309, 1/BA/1328:1334 | No text annotation | ||
| IL_6BY1_120 | 1/BA/1399:1401, 1/BA/1501:1504 | No text annotation | homologous IL_6CZR_165 NA | |
| IL_6BY1_121 | 1/BA/1401:1404, 1/BA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_6BY1_122 | 1/BA/1405:1407, 1/BA/1494:1496 | Isolated non-canonical cWW pair | geometric IL_4E59_001 IL_87907.2 | |
| IL_6BY1_123 | 1/BA/1407:1409, 1/BA/1491:1494 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_6BY1_411 | 1/BA/1412:1414, 1/BA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_6BY1_125 | 1/BA/1416:1419, 1/BA/1481:1484 | Double sheared | homologous IL_6CZR_169 NA | |
| IL_6BY1_126 | 1/BA/1430:1435, 1/BA/1466:1470 | Triple sheared related | homologous IL_5J7L_063 IL_80231.1 | |
| IL_6BY1_127 | 1/BA/1440:1442, 1/BA/1460:1461 | Single bulged A | homologous IL_5J7L_064 IL_31462.7 | |
| IL_6BY1_128 | 1/BA/1445:1449, 1/BA/1454:1457 | No text annotation | ||
| IL_6BY1_129 | 1/CA/24:30, 1/CA/510:516 | Triple sheared with non-canonical cWW | geometric IL_7RQB_001 NA | |
| IL_6BY1_130 | 1/CA/36:37, 1/CA/442:444 | Single bulged A | homologous IL_5J7L_246 IL_31462.7 | |
| IL_6BY1_131 | 1/CA/43:44, 1/CA/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.3 | |
| IL_6BY1_132 | 1/CA/81:85, 1/CA/97:105 | No text annotation | homologous IL_5J7L_248 IL_37015.1 | |
| IL_6BY1_133 | 1/CA/183:184, 1/CA/212:214 | Single stack bend | homologous IL_4WF9_007 IL_90729.1 | |
| IL_6BY1_134 | 1/CA/188:194, 1/CA/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_006 IL_04346.10 | |
| IL_6BY1_135 | 1/CA/239:245, 1/CA/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.2 | |
| IL_6BY1_136 | 1/CA/269:271, 1/CA/366:370 | No text annotation | homologous IL_5J7L_252 IL_47972.1 | |
| IL_6BY1_137 | 1/CA/274:281, 1/CA/359:363 | No text annotation | homologous IL_5J7L_253 IL_77870.1 | |
| IL_6BY1_138 | 1/CA/293:295, 1/CA/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_6BY1_139 | 1/CA/481:484, 1/CA/496:509 | No text annotation | homologous IL_5J7L_255 IL_81516.2 | |
| IL_6BY1_140 | 1/CA/536:539, 1/CA/554:557 | Double sheared | homologous IL_5J7L_256 IL_09705.15 | |
| IL_6BY1_141 | 1/CA/564:566, 1/CA/575:577 | Isolated non-canonical cWW pair | homologous IL_4WF9_017 IL_07785.1 | |
| IL_6BY1_142 | 1/CA/606:610, 1/CA/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 IL_66798.2 | |
| IL_6BY1_143 | 1/CA/672:674, 1/CA/806:808 | No text annotation | homologous IL_7RQB_017 NA | |
| IL_6BY1_144 | 1/CA/674:678, 1/CA/799:806 | tHW-tHW cross-strand stack | geometric IL_5J7L_260 IL_54041.2 | |
| IL_6BY1_145 | 1/CA/697:698, 1/CA/763:765 | Single bulged A | homologous IL_5J7L_261 IL_31462.7 | |
| IL_6BY1_146 | 1/CA/702:703, 1/CA/728:730 | Single bulged G | homologous IL_7RQB_020 NA | |
| IL_6BY1_147 | 1/CA/703:707, 1/CA/724:728 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_6BY1_148 | 1/CA/738:740, 1/CA/757:758 | Major groove platform | homologous IL_5J7L_264 IL_48076.6 | |
| IL_6BY1_149 | 1/CA/775:777, 1/CA/787:791 | Multiple bulged bases | homologous IL_7RQB_023 NA | |
| IL_6BY1_150 | 1/CA/844:847, 1/CA/933:934 | 90 degree turn | geometric IL_5J7L_267 IL_90729.1 | |
| IL_6BY1_369 | 1/CA/844:848, 1/CA/930:934 | No text annotation | geometric IL_5J7L_399 IL_96236.1 | |
| IL_6BY1_151 | 1/CA/847:848, 1/CA/930:933 | Stack outside cWW | homologous IL_5J7L_268 IL_56987.1 | |
| IL_6BY1_152 | 1/CA/850:851, 1/CA/926:928 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
| IL_6BY1_153 | 1/CA/856:862, 1/CA/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 IL_29198.2 | |
| IL_6BY1_154 | 1/CA/862:863, 1/CA/913:915 | Single bulged G | geometric IL_5J7L_271 IL_00225.14 | |
| IL_6BY1_155 | 1/CA/864:868, 1/CA/909:912 | C-loop with bulged stacked A's | homologous IL_5J7L_272 IL_26222.2 | |
| IL_6BY1_156 | 1/CA/870:872, 1/CA/905:907 | Isolated cWS basepair | homologous IL_4WF9_034 NA | |
| IL_6BY1_157 | 1/CA/875:880, 1/CA/897:902 | Triple sheared related | geometric IL_4V88_421 NA | |
| IL_6BY1_158 | 1/CA/880:881, 1/CA/895:897 | Single bulged A | homologous IL_7RQB_033 NA | |
| IL_6BY1_159 | 1/CA/994:996, 1/CA/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_6BY1_160 | 1/CA/998:1002, 1/CA/1153:1157 | UAA/GAN | homologous IL_7A0S_033 IL_38507.2 | |
| IL_6BY1_161 | 1/CA/1004:1011, 1/CA/1150:1151 | SSU/LSU pseudoknot | homologous IL_4WF9_037 IL_41203.4 | |
| IL_6BY1_162 | 1/CA/1011:1013, 1/CA/1149:1150 | Single bulged U | geometric IL_5J7L_279 IL_89505.4 | |
| IL_6BY1_163 | 1/CA/1018:1024, 1/CA/1140:1144 | Kink-turn related | geometric IL_4WF9_039 IL_57188.5 | |
| IL_6BY1_164 | 1/CA/1024:1030, 1/CA/1124:1140 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
| IL_6BY1_165 | 1/CA/1031:1034, 1/CA/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_6BY1_166 | 1/CA/1038:1041, 1/CA/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_85033.2 | |
| IL_6BY1_370 | 1/CA/1043:1051, 1/CA/1108:1112 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_6BY1_168 | 1/CA/1058:1062, 1/CA/1076:1080 | No text annotation | homologous IL_5J7L_384 NA | |
| IL_6BY1_169 | 1/CA/1087:1090, 1/CA/1101:1102 | No text annotation | homologous IL_6PRV_002 NA | |
| IL_6BY1_170 | 1/CA/1196:1198, 1/CA/1247:1250 | Isolated cWS basepair | homologous IL_5J7L_286 IL_42997.3 | |
| IL_6BY1_171 | 1/CA/1202:1206, 1/CA/1240:1243 | No text annotation | homologous IL_5J7L_287 IL_91920.1 | |
| IL_6BY1_172 | 1/CA/1208:1215, 1/CA/1234:1238 | Kink-turn | homologous IL_5J7L_288 IL_70923.9 | |
| IL_6BY1_173 | 1/CA/1262:1269, 1/CA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.10 | |
| IL_6BY1_174 | 1/CA/1310:1313, 1/CA/1603:1604 | Major groove platform; stack outside cWW | homologous IL_4WF9_049 IL_50694.7 | |
| IL_6BY1_175 | 1/CA/1319:1323, 1/CA/1331:1333 | Major groove minor groove platform with tHH | homologous IL_4WF9_050 IL_83150.2 | |
| IL_6BY1_176 | 1/CA/1351:1353, 1/CA/1379:1380 | Single stack bend | geometric IL_7A0S_005 IL_90729.1 | |
| IL_6BY1_372 | 1/CA/1351:1355, 1/CA/1376:1380 | UAA/GAN | homologous IL_7A0S_048 IL_89021.2 | |
| IL_6BY1_177 | 1/CA/1353:1355, 1/CA/1376:1379 | No text annotation | ||
| IL_6BY1_178 | 1/CA/1357:1361, 1/CA/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
| IL_6BY1_179 | 1/CA/1415:1416, 1/CA/1582:1587 | No text annotation | homologous IL_5J7L_294 IL_87211.1 | |
| IL_6BY1_180 | 1/CA/1417:1422, 1/CA/1576:1581 | UAA/GAN with extra cWW | geometric IL_7RQB_107 NA | |
| IL_6BY1_181 | 1/CA/1432:1435, 1/CA/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.2 | |
| IL_6BY1_182 | 1/CA/1437:1440, 1/CA/1551:1555 | tSH-tHW | homologous IL_7A0S_053 IL_99646.2 | |
| IL_6BY1_183 | 1/CA/1450:1451, 1/CA/1459:1461 | Single bulged U | homologous IL_5J7L_298 IL_89505.4 | |
| IL_6BY1_184 | 1/CA/1468:1471, 1/CA/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_6BY1_373 | 1/CA/1474:1478, 1/CA/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 IL_38862.4 | |
| IL_6BY1_186 | 1/CA/1481:1482, 1/CA/1507:1510 | 180 degree turn | homologous IL_5J7L_301 IL_00881.1 | |
| IL_6BY1_187 | 1/CA/1489:1491, 1/CA/1499:1500 | Single bulged A | homologous IL_5J7L_302 IL_31462.7 | |
| IL_6BY1_188 | 1/CA/1526:1529, 1/CA/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 IL_23774.1 | |
| IL_6BY1_189 | 1/CA/1651:1656, 1/CA/2004:2006 | No text annotation | homologous IL_7A0S_059 IL_12566.4 | |
| IL_6BY1_374 | 1/CA/1663:1665, 1/CA/1995:1997 | Isolated tWW turn | homologous IL_5J7L_305 IL_67095.2 | |
| IL_6BY1_375 | 1/CA/1666:1669, 1/CA/1993:1994 | Major groove platform; stack outside cWW | geometric IL_8C3A_082 NA | |
| IL_6BY1_376 | 1/CA/1666:1674, 1/CA/1990:1994 | No text annotation | geometric IL_8C3A_484 NA | |
| IL_6BY1_377 | 1/CA/1669:1674, 1/CA/1990:1993 | Intercalated tWH | homologous IL_4WF9_065 IL_76758.2 | |
| IL_6BY1_190 | 1/CA/1686:1691, 1/CA/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_5J7L_308 IL_47346.2 | |
| IL_6BY1_191 | 1/CA/1712:1718, 1/CA/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 IL_88269.4 | |
| IL_6BY1_192 | 1/CA/1720:1724, 1/CA/1736:1740 | Triple sheared | homologous IL_5J7L_310 IL_50730.2 | |
| IL_6BY1_193 | 1/CA/1727:1728, 1/CA/1731:1733 | Single bulged C | geometric IL_5J7L_311 IL_61258.15 | |
| IL_6BY1_194 | 1/CA/1770:1771, 1/CA/1980:1982 | Single bulged A | homologous IL_7A0S_064 IL_31462.7 | |
| IL_6BY1_195 | 1/CA/1798:1804, 1/CA/1813:1821 | Kink-turn related | homologous IL_7A0S_065 IL_17069.5 | |
| IL_6BY1_196 | 1/CA/1837:1840, 1/CA/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_6BY1_197 | 1/CA/1841:1842, 1/CA/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.5 | |
| IL_6BY1_198 | 1/CA/1845:1849, 1/CA/1893:1895 | 8-nt loop receptor | geometric IL_6CK5_002 IL_36516.3 | |
| IL_6BY1_378 | 1/CA/1851:1860, 1/CA/1882:1891 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
| IL_6BY1_199 | 1/CA/1864:1867, 1/CA/1874:1878 | UAA/GAN related | homologous IL_5J7L_317 IL_77691.5 | |
| IL_6BY1_200 | 1/CA/1933:1934, 1/CA/1964:1967 | Bulged stacked bases | geometric IL_7RQB_076 NA | |
| IL_6BY1_201 | 1/CA/1934:1945, 1/CA/1961:1964 | No text annotation | homologous IL_4WF9_077 IL_42218.2 | |
| IL_6BY1_202 | 1/CA/2050:2052, 1/CA/2617:2618 | Major groove platform | homologous IL_5J7L_320 IL_48076.6 | |
| IL_6BY1_203 | 1/CA/2054:2056, 1/CA/2612:2615 | No text annotation | homologous IL_5J7L_321 IL_83389.2 | |
| IL_6BY1_204 | 1/CA/2067:2069, 1/CA/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_6BY1_205 | 1/CA/2070:2071, 1/CA/2438:2441 | Minor groove platform | homologous IL_7A0S_076 IL_51454.3 | |
| IL_6BY1_206 | 1/CA/2081:2083, 1/CA/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7A0S_077 IL_85599.2 | |
| IL_6BY1_207 | 1/CA/2085:2087, 1/CA/2232:2234 | Isolated non-canonical cWW pair | homologous IL_7A0S_078 IL_28037.2 | |
| IL_6BY1_212 | 1/CA/2202:2204, 1/CA/2220:2221 | Single bulged U | homologous IL_5J7L_331 IL_89505.4 | |
| IL_6BY1_213 | 1/CA/2350:2353, 1/CA/2364:2367 | Double sheared | homologous IL_5J7L_333 IL_09705.15 | |
| IL_6BY1_214 | 1/CA/2401:2403, 1/CA/2414:2415 | Single bulged U | homologous IL_5J7L_334 IL_89505.4 | |
| IL_6BY1_215 | 1/CA/2453:2454, 1/CA/2498:2500 | Single stack bend | homologous IL_4WF9_089 IL_26793.1 | |
| IL_6BY1_216 | 1/CA/2454:2455, 1/CA/2496:2498 | Major groove platform | geometric IL_4WF9_090 IL_48076.6 | |
| IL_6BY1_380 | 1/CA/2457:2459, 1/CA/2493:2494 | Major groove platform | homologous IL_9DFE_093 IL_48076.6 | |
| IL_6BY1_218 | 1/CA/2459:2461, 1/CA/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_5J7L_337 IL_51387.3 | |
| IL_6BY1_219 | 1/CA/2466:2470, 1/CA/2480:2484 | Double sheared with non-canonical cWW | homologous IL_7A0S_087 IL_17948.2 | |
| IL_6BY1_220 | 1/CA/2507:2508, 1/CA/2580:2582 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_6BY1_221 | 1/CA/2510:2512, 1/CA/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_5J7L_340 IL_07785.1 | |
| IL_6BY1_222 | 1/CA/2512:2513, 1/CA/2571:2574 | No text annotation | geometric IL_5J7L_341 IL_42626.2 | |
| IL_6BY1_412 | 1/CA/2522:2523, 1/CA/2540:2543 | Major groove platform with intercalation | homologous IL_4WF9_097 IL_02555.1 | |
| IL_6BY1_224 | 1/CA/2591:2592, 1/CA/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_6BY1_225 | 1/CA/2636:2640, 1/CA/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 IL_04638.3 | |
| IL_6BY1_226 | 1/CA/2652:2658, 1/CA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7A0S_094 IL_16458.4 | |
| IL_6BY1_227 | 1/CA/2680:2684, 1/CA/2725:2727 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
| IL_6BY1_228 | 1/CA/2687:2691, 1/CA/2718:2722 | UAA/GAN related, with intercalation | homologous IL_4WF9_102 IL_23774.1 | |
| IL_6BY1_229 | 1/CA/2695:2696, 1/CA/2711:2714 | Multiple bulged bases | homologous IL_7A0S_097 IL_42626.2 | |
| IL_6BY1_230 | 1/CA/2737:2742, 1/CA/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_6BY1_231 | 1/CA/2795:2796, 1/CA/2799:2801 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_6BY1_232 | 1/CA/2806:2811, 1/CA/2889:2892 | No text annotation | geometric IL_5J7L_351 IL_29471.1 | |
| IL_6BY1_233 | 1/CA/2838:2839, 1/CA/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_6BY1_234 | 1/CA/2843:2846, 1/CA/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
| IL_6BY1_382 | 1/CA/2847:2852, 1/CA/2865:2869 | tHS double platform | homologous IL_5J7L_354 IL_70411.2 | |
| IL_6BY1_383 | 1/CB/17:18, 1/CB/65:67 | Major groove intercalation | homologous IL_4WF9_112 IL_31462.7 | |
| IL_6BY1_237 | 1/CB/23:28, 1/CB/56:60 | No text annotation | homologous IL_5J7L_356 IL_18472.4 | |
| IL_6BY1_238 | 1/CB/30:31, 1/CB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 IL_68140.4 | |
| IL_6BY1_239 | 1/CB/34:38, 1/CB/44:48 | Symmetric double minor groove platform | homologous IL_5J7L_358 IL_58103.11 | |
| IL_6BY1_240 | 1/CB/71:79, 1/CB/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 | |
| IL_6BY1_241 | 1/DA/24:30, 1/DA/510:516 | Triple sheared with non-canonical cWW | geometric IL_7RQB_001 NA | |
| IL_6BY1_242 | 1/DA/36:37, 1/DA/442:444 | Single bulged A | homologous IL_5J7L_246 IL_31462.7 | |
| IL_6BY1_384 | 1/DA/42:44, 1/DA/434:437 | Minor groove platform with extra cWW | homologous IL_4WF9_003 IL_90351.1 | |
| IL_6BY1_243 | 1/DA/43:44, 1/DA/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.3 | |
| IL_6BY1_244 | 1/DA/81:85, 1/DA/97:105 | No text annotation | homologous IL_5J7L_248 IL_37015.1 | |
| IL_6BY1_245 | 1/DA/183:184, 1/DA/212:214 | Single stack bend | homologous IL_7A0S_005 IL_90729.1 | |
| IL_6BY1_246 | 1/DA/188:194, 1/DA/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_6BY1_385 | 1/DA/238:245, 1/DA/253:259 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_007 IL_04346.10 | |
| IL_6BY1_247 | 1/DA/239:245, 1/DA/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.2 | |
| IL_6BY1_248 | 1/DA/269:271, 1/DA/366:370 | No text annotation | homologous IL_5J7L_252 IL_47972.1 | |
| IL_6BY1_386 | 1/DA/274:285, 1/DA/355:363 | No text annotation | ||
| IL_6BY1_249 | 1/DA/293:295, 1/DA/343:347 | No text annotation | homologous IL_5J7L_254 IL_69440.3 | |
| IL_6BY1_250 | 1/DA/481:484, 1/DA/496:509 | No text annotation | geometric IL_5J7L_255 IL_81516.2 | |
| IL_6BY1_251 | 1/DA/536:539, 1/DA/554:557 | Double sheared | homologous IL_5J7L_256 IL_09705.15 | |
| IL_6BY1_252 | 1/DA/564:566, 1/DA/575:577 | Isolated non-canonical cWW pair | homologous IL_4WF9_017 IL_07785.1 | |
| IL_6BY1_253 | 1/DA/606:610, 1/DA/618:622 | No text annotation | ||
| IL_6BY1_254 | 1/DA/672:674, 1/DA/806:808 | No text annotation | homologous IL_7RQB_017 NA | |
| IL_6BY1_255 | 1/DA/674:678, 1/DA/799:806 | tHW-tHW cross-strand stack | geometric IL_5J7L_260 IL_54041.2 | |
| IL_6BY1_256 | 1/DA/697:698, 1/DA/763:765 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_6BY1_257 | 1/DA/702:703, 1/DA/728:730 | Single bulged G | geometric IL_7RQB_020 NA | |
| IL_6BY1_387 | 1/DA/702:707, 1/DA/724:730 | No text annotation | geometric IL_4V88_462 NA | |
| IL_6BY1_258 | 1/DA/703:707, 1/DA/724:728 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_6BY1_259 | 1/DA/738:740, 1/DA/757:758 | Major groove platform | homologous IL_5J7L_264 IL_48076.6 | |
| IL_6BY1_260 | 1/DA/775:777, 1/DA/787:791 | Multiple bulged bases | homologous IL_4WF9_027 IL_06549.2 | |
| IL_6BY1_261 | 1/DA/837:838, 1/DA/940:942 | Single stack bend | homologous IL_7A0S_022 IL_90729.1 | |
| IL_6BY1_262 | 1/DA/844:847, 1/DA/933:934 | 90 degree turn | homologous IL_5J7L_267 IL_90729.1 | |
| IL_6BY1_413 | 1/DA/844:848, 1/DA/930:934 | No text annotation | homologous IL_5J7L_399 IL_96236.1 | |
| IL_6BY1_263 | 1/DA/847:848, 1/DA/930:933 | Major groove intercalation | geometric IL_1NBS_009 IL_82107.5 | |
| IL_6BY1_264 | 1/DA/850:851, 1/DA/926:928 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
| IL_6BY1_265 | 1/DA/856:862, 1/DA/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 IL_29198.2 | |
| IL_6BY1_266 | 1/DA/862:863, 1/DA/913:915 | Single bulged G | geometric IL_5J7L_271 IL_00225.14 | |
| IL_6BY1_267 | 1/DA/864:868, 1/DA/909:912 | C-loop with bulged stacked A's | homologous IL_5J7L_272 IL_26222.2 | |
| IL_6BY1_268 | 1/DA/870:872, 1/DA/905:907 | Isolated cWS basepair | homologous IL_4WF9_034 NA | |
| IL_6BY1_269 | 1/DA/875:879, 1/DA/898:902 | Double sheared with non-canonical cWW | homologous IL_5J7L_274 IL_17948.2 | |
| IL_6BY1_414 | 1/DA/880:881, 1/DA/895:897 | Single bulged A | homologous IL_9DFE_032 IL_31462.7 | |
| IL_6BY1_271 | 1/DA/994:996, 1/DA/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_6BY1_272 | 1/DA/998:1002, 1/DA/1153:1157 | UAA/GAN | homologous IL_7A0S_033 IL_38507.2 | |
| IL_6BY1_273 | 1/DA/1004:1011, 1/DA/1150:1151 | SSU/LSU pseudoknot | geometric IL_5J7L_278 IL_41203.4 | |
| IL_6BY1_274 | 1/DA/1011:1013, 1/DA/1149:1150 | Single bulged U | homologous IL_5J7L_279 IL_89505.4 | |
| IL_6BY1_275 | 1/DA/1018:1024, 1/DA/1140:1144 | Kink-turn related | geometric IL_4WF9_039 IL_57188.5 | |
| IL_6BY1_276 | 1/DA/1024:1030, 1/DA/1124:1140 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
| IL_6BY1_277 | 1/DA/1031:1034, 1/DA/1121:1123 | Isolated non-canonical cWW pair | homologous IL_4WF9_041 IL_57744.1 | |
| IL_6BY1_278 | 1/DA/1038:1041, 1/DA/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_85033.2 | |
| IL_6BY1_415 | 1/DA/1043:1051, 1/DA/1108:1112 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_6BY1_280 | 1/DA/1059:1062, 1/DA/1076:1079 | No text annotation | geometric IL_5J7L_285 IL_92446.2 | |
| IL_6BY1_281 | 1/DA/1196:1198, 1/DA/1247:1250 | Isolated cWS basepair | homologous IL_5J7L_286 IL_42997.3 | |
| IL_6BY1_282 | 1/DA/1202:1206, 1/DA/1240:1243 | No text annotation | homologous IL_5J7L_287 IL_91920.1 | |
| IL_6BY1_283 | 1/DA/1208:1215, 1/DA/1234:1238 | Kink-turn | homologous IL_5J7L_288 IL_70923.9 | |
| IL_6BY1_284 | 1/DA/1262:1269, 1/DA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.10 | |
| IL_6BY1_285 | 1/DA/1310:1313, 1/DA/1603:1604 | Major groove platform; stack outside cWW | homologous IL_4WF9_049 IL_50694.7 | |
| IL_6BY1_286 | 1/DA/1319:1323, 1/DA/1331:1333 | Major groove minor groove platform with tHH | homologous IL_4WF9_050 IL_83150.2 | |
| IL_6BY1_287 | 1/DA/1351:1353, 1/DA/1379:1380 | Single stack bend with SAM intercalation | geometric IL_6FZ0_001 IL_90729.1 | |
| IL_6BY1_393 | 1/DA/1351:1355, 1/DA/1376:1380 | UAA/GAN | homologous IL_7A0S_048 IL_89021.2 | |
| IL_6BY1_288 | 1/DA/1353:1355, 1/DA/1376:1379 | No text annotation | ||
| IL_6BY1_289 | 1/DA/1357:1361, 1/DA/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
| IL_6BY1_290 | 1/DA/1415:1416, 1/DA/1582:1587 | No text annotation | homologous IL_5J7L_294 IL_87211.1 | |
| IL_6BY1_291 | 1/DA/1417:1421, 1/DA/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_6BY1_292 | 1/DA/1432:1435, 1/DA/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.2 | |
| IL_6BY1_293 | 1/DA/1437:1440, 1/DA/1551:1555 | tSH-tHW | homologous IL_5J7L_297 IL_99646.2 | |
| IL_6BY1_294 | 1/DA/1450:1451, 1/DA/1459:1461 | Single bulged U | geometric IL_5J7L_298 IL_89505.4 | |
| IL_6BY1_295 | 1/DA/1468:1471, 1/DA/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_6BY1_394 | 1/DA/1474:1478, 1/DA/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 IL_38862.4 | |
| IL_6BY1_297 | 1/DA/1479:1482, 1/DA/1507:1512 | No text annotation | ||
| IL_6BY1_298 | 1/DA/1489:1491, 1/DA/1499:1500 | Single bulged A | homologous IL_5J7L_302 IL_31462.7 | |
| IL_6BY1_299 | 1/DA/1526:1529, 1/DA/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 IL_23774.1 | |
| IL_6BY1_300 | 1/DA/1651:1656, 1/DA/2004:2006 | No text annotation | homologous IL_7A0S_059 IL_12566.4 | |
| IL_6BY1_301 | 1/DA/1663:1665, 1/DA/1995:1997 | Isolated tWW turn | homologous IL_5J7L_305 IL_67095.2 | |
| IL_6BY1_302 | 1/DA/1666:1669, 1/DA/1993:1994 | Major groove platform; stack outside cWW | homologous IL_4WF9_064 IL_50694.7 | |
| IL_6BY1_395 | 1/DA/1666:1674, 1/DA/1990:1994 | No text annotation | homologous IL_4WF9_117 IL_22854.4 | |
| IL_6BY1_303 | 1/DA/1669:1674, 1/DA/1990:1993 | Intercalated tWH | geometric IL_5TBW_077 NA | |
| IL_6BY1_304 | 1/DA/1686:1691, 1/DA/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_6BY1_396 | 1/DA/1712:1726, 1/DA/1734:1746 | No text annotation | ||
| IL_6BY1_305 | 1/DA/1727:1728, 1/DA/1731:1733 | Single bulged C | homologous IL_5J7L_311 IL_61258.15 | |
| IL_6BY1_306 | 1/DA/1770:1771, 1/DA/1980:1982 | Single bulged A | homologous IL_4WF9_068 IL_31462.7 | |
| IL_6BY1_307 | 1/DA/1798:1804, 1/DA/1813:1821 | Kink-turn related | geometric IL_4V9F_065 IL_17069.5 | |
| IL_6BY1_308 | 1/DA/1837:1840, 1/DA/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_6BY1_309 | 1/DA/1841:1842, 1/DA/1898:1901 | Major groove intercalation | homologous IL_4WF9_071 IL_82107.5 | |
| IL_6BY1_310 | 1/DA/1846:1849, 1/DA/1893:1894 | Major groove minor groove platform; mini C-loop | homologous IL_7A0S_068 IL_68140.4 | |
| IL_6BY1_397 | 1/DA/1849:1860, 1/DA/1882:1893 | No text annotation | ||
| IL_6BY1_311 | 1/DA/1864:1867, 1/DA/1874:1878 | UAA/GAN related | homologous IL_5J7L_317 IL_77691.5 | |
| IL_6BY1_312 | 1/DA/1933:1934, 1/DA/1964:1967 | Bulged stacked bases | homologous IL_7A0S_071 IL_22551.4 | |
| IL_6BY1_313 | 1/DA/1934:1945, 1/DA/1961:1964 | No text annotation | geometric IL_4WF9_077 IL_42218.2 | |
| IL_6BY1_314 | 1/DA/2050:2052, 1/DA/2617:2618 | Major groove platform | homologous IL_5J7L_320 IL_48076.6 | |
| IL_6BY1_315 | 1/DA/2054:2056, 1/DA/2612:2615 | No text annotation | homologous IL_5J7L_321 IL_83389.2 | |
| IL_6BY1_316 | 1/DA/2067:2069, 1/DA/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_6BY1_317 | 1/DA/2070:2071, 1/DA/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_6BY1_398 | 1/DA/2081:2083, 1/DA/2236:2239 | No text annotation | homologous IL_9DFE_082 IL_85599.2 | |
| IL_6BY1_319 | 1/DA/2085:2087, 1/DA/2232:2234 | Isolated non-canonical cWW pair | homologous IL_7A0S_078 IL_28037.2 | |
| IL_6BY1_321 | 1/DA/2202:2204, 1/DA/2220:2221 | Single bulged U | homologous IL_5J7L_331 IL_89505.4 | |
| IL_6BY1_322 | 1/DA/2350:2353, 1/DA/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_6BY1_399 | 1/DA/2401:2403, 1/DA/2414:2415 | No text annotation | ||
| IL_6BY1_324 | 1/DA/2453:2454, 1/DA/2498:2500 | Single stack bend | homologous IL_4WF9_089 IL_26793.1 | |
| IL_6BY1_325 | 1/DA/2454:2455, 1/DA/2496:2498 | Major groove platform | geometric IL_4WF9_090 IL_48076.6 | |
| IL_6BY1_400 | 1/DA/2457:2459, 1/DA/2493:2494 | Major groove platform | homologous IL_4WF9_091 IL_48076.6 | |
| IL_6BY1_327 | 1/DA/2459:2461, 1/DA/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_5J7L_337 IL_51387.3 | |
| IL_6BY1_328 | 1/DA/2466:2470, 1/DA/2480:2484 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 IL_17948.2 | |
| IL_6BY1_329 | 1/DA/2507:2508, 1/DA/2580:2582 | Major groove platform | homologous IL_4WF9_094 IL_07039.3 | |
| IL_6BY1_330 | 1/DA/2510:2512, 1/DA/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_4WF9_095 IL_07785.1 | |
| IL_6BY1_331 | 1/DA/2512:2513, 1/DA/2571:2574 | Multiple bulged bases | homologous IL_7RQB_098 NA | |
| IL_6BY1_401 | 1/DA/2522:2523, 1/DA/2540:2543 | Major groove platform with intercalation | homologous IL_4WF9_097 IL_02555.1 | |
| IL_6BY1_333 | 1/DA/2591:2592, 1/DA/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_6BY1_334 | 1/DA/2636:2640, 1/DA/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 IL_04638.3 | |
| IL_6BY1_335 | 1/DA/2652:2658, 1/DA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_5J7L_346 IL_16458.4 | |
| IL_6BY1_336 | 1/DA/2680:2684, 1/DA/2725:2727 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
| IL_6BY1_337 | 1/DA/2687:2691, 1/DA/2718:2722 | UAA/GAN related, with intercalation | homologous IL_4WF9_102 IL_23774.1 | |
| IL_6BY1_338 | 1/DA/2695:2696, 1/DA/2711:2714 | Multiple bulged bases | homologous IL_4WF9_103 IL_42626.2 | |
| IL_6BY1_339 | 1/DA/2737:2742, 1/DA/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_6BY1_340 | 1/DA/2795:2796, 1/DA/2799:2801 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_6BY1_341 | 1/DA/2806:2811, 1/DA/2889:2892 | No text annotation | homologous IL_5J7L_351 IL_29471.1 | |
| IL_6BY1_342 | 1/DA/2838:2839, 1/DA/2878:2880 | Major groove intercalation | homologous IL_4WF9_106 IL_66635.5 | |
| IL_6BY1_343 | 1/DA/2843:2846, 1/DA/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
| IL_6BY1_344 | 1/DA/2847:2852, 1/DA/2865:2869 | tHS double platform | homologous IL_5J7L_354 IL_70411.2 | |
| IL_6BY1_345 | 1/DB/17:19, 1/DB/64:67 | No text annotation | geometric IL_8C3A_508 NA | |
| IL_6BY1_346 | 1/DB/23:28, 1/DB/56:60 | No text annotation | homologous IL_7A0S_103 IL_18472.4 | |
| IL_6BY1_347 | 1/DB/30:31, 1/DB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 IL_68140.4 | |
| IL_6BY1_348 | 1/DB/33:38, 1/DB/44:49 | No text annotation | geometric IL_7A0S_105 NA | |
| IL_6BY1_349 | 1/DB/71:79, 1/DB/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6BY1_350 | No text annotation | ||
| IL_6BY1_351 | No text annotation | ||
| IL_6BY1_028 | No text annotation | ||
| IL_6BY1_031 | No text annotation | ||
| IL_6BY1_034 | No text annotation | ||
| IL_6BY1_041 | No text annotation | ||
| IL_6BY1_044 | No text annotation | ||
| IL_6BY1_357 | Partly complementary | ||
| IL_6BY1_047 | No text annotation | ||
| IL_6BY1_359 | Tandem non-canonical cWW pairs | ||
| IL_6BY1_063 | No text annotation | ||
| IL_6BY1_064 | Single stack bend | ||
| IL_6BY1_065 | No text annotation | ||
| IL_6BY1_360 | Tandem non-canonical cWW pairs | ||
| IL_6BY1_072 | No text annotation | ||
| IL_6BY1_362 | tSH-tHW-tHS-cWW | ||
| IL_6BY1_363 | No text annotation | ||
| IL_6BY1_091 | No text annotation | ||
| IL_6BY1_094 | No text annotation | ||
| IL_6BY1_097 | No text annotation | ||
| IL_6BY1_366 | Other IL | ||
| IL_6BY1_104 | No text annotation | ||
| IL_6BY1_367 | Isolated non-canonical cWW pair | ||
| IL_6BY1_116 | No text annotation | ||
| IL_6BY1_368 | No text annotation | ||
| IL_6BY1_124 | Tandem non-canonical cWW pairs | ||
| IL_6BY1_167 | No text annotation | ||
| IL_6BY1_371 | No text annotation | ||
| IL_6BY1_185 | tSH-tHW-tHS-cWW | ||
| IL_6BY1_379 | Other IL | ||
| IL_6BY1_208 | No text annotation | ||
| IL_6BY1_209 | Isolated non-canonical cWW pair | ||
| IL_6BY1_210 | No text annotation | ||
| IL_6BY1_211 | No text annotation | ||
| IL_6BY1_217 | Major groove platform with extra pair | ||
| IL_6BY1_223 | No text annotation | ||
| IL_6BY1_381 | No text annotation | ||
| IL_6BY1_235 | No text annotation | ||
| IL_6BY1_236 | Major groove platform with extra pair | ||
| IL_6BY1_388 | No text annotation | ||
| IL_6BY1_389 | No text annotation | ||
| IL_6BY1_390 | No text annotation | ||
| IL_6BY1_391 | Isolated non-canonical cWW pair | ||
| IL_6BY1_270 | Other IL | ||
| IL_6BY1_279 | No text annotation | ||
| IL_6BY1_392 | tSH-tHH-tHS | ||
| IL_6BY1_296 | No text annotation | ||
| IL_6BY1_318 | Double sheared with non-canonical cWW | ||
| IL_6BY1_320 | Kink-turn | ||
| IL_6BY1_323 | Isolated non-canonical cWW pair | ||
| IL_6BY1_326 | Major groove platform with extra pair | ||
| IL_6BY1_332 | No text annotation | ||
| IL_6BY1_402 | Isolated non-canonical cWW with bulges | ||
| IL_6BY1_403 | Tandem non-canonical cWW pairs |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6BY1_001 | 1/AA/46:47, 1/AA/361:367, 1/AA/393:395 | No text annotation | homologous J3_6CZR_015 NA | |
| J3_6BY1_055 | 1/AA/46:52, 1/AA/359:367, 1/AA/393:395 | No text annotation | homologous J3_5J7L_050 J3_46317.4 | |
| J3_6BY1_002 | 1/AA/586:588, 1/AA/651:654, 1/AA/754:755 | No text annotation | homologous J3_6CZR_016 NA | |
| J3_6BY1_056 | 1/AA/586:588, 1/AA/651:655, 1/AA/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_6BY1_003 | 1/AA/672:673, 1/AA/717:725, 1/AA/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_6BY1_004 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J3_6BY1_005 | 1/AA/936:939, 1/AA/1344:1350, 1/AA/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_6BY1_006 | 1/AA/943:946, 1/AA/1235:1237, 1/AA/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_6BY1_080 | 1/AA/955:962, 1/AA/973:984, 1/AA/1221:1225 | No text annotation | homologous J3_5J7L_006 J3_83516.4 | |
| J3_6BY1_008 | 1/AA/990:993, 1/AA/1045:1047, 1/AA/1210:1215 | No text annotation | homologous J3_5J7L_007 J3_82572.1 | |
| J3_6BY1_059 | 1/AA/990:997, 1/AA/1044:1047, 1/AA/1210:1215 | No text annotation | homologous J3_5J7L_053 J3_76475.2 | |
| J3_6BY1_009 | 1/AA/1003:1006, 1/AA/1023:1028, 1/AA/1033:1037 | No text annotation | ||
| J3_6BY1_010 | 1/AA/1063:1068, 1/AA/1107:1113, 1/AA/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_6BY1_011 | 1/AA/1073:1075, 1/AA/1082:1087, 1/AA/1098:1102 | No text annotation | ||
| J3_6BY1_012 | 1/AA/1116:1118, 1/AA/1155:1158, 1/AA/1181:1184 | No text annotation | geometric J3_8C3A_043 NA | |
| J3_6BY1_061 | 1/AA/1116:1118, 1/AA/1155:1162, 1/AA/1174:1184 | No text annotation | ||
| J3_6BY1_013 | 1/AA/1237:1241, 1/AA/1296:1308, 1/AA/1329:1337 | No text annotation | ||
| J3_6BY1_014 | 1/BA/46:47, 1/BA/361:367, 1/BA/393:395 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_6BY1_062 | 1/BA/46:52, 1/BA/359:367, 1/BA/393:395 | No text annotation | homologous J3_5J7L_050 J3_46317.4 | |
| J3_6BY1_015 | 1/BA/586:588, 1/BA/651:654, 1/BA/754:755 | No text annotation | homologous J3_5J7L_002 J3_56052.5 | |
| J3_6BY1_063 | 1/BA/586:588, 1/BA/651:655, 1/BA/751:755 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
| J3_6BY1_016 | 1/BA/672:673, 1/BA/717:725, 1/BA/732:734 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_6BY1_017 | 1/BA/826:829, 1/BA/857:861, 1/BA/868:874 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J3_6BY1_018 | 1/BA/936:939, 1/BA/1344:1350, 1/BA/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_6BY1_019 | 1/BA/943:946, 1/BA/1235:1237, 1/BA/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
| J3_6BY1_020 | 1/BA/955:962, 1/BA/973:984, 1/BA/1221:1225 | No text annotation | homologous J3_5J7L_006 J3_83516.4 | |
| J3_6BY1_021 | 1/BA/990:993, 1/BA/1045:1047, 1/BA/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_6BY1_065 | 1/BA/990:993, 1/BA/1045:1048, 1/BA/1209:1215 | No text annotation | ||
| J3_6BY1_066 | 1/BA/990:997, 1/BA/1044:1048, 1/BA/1209:1215 | No text annotation | ||
| J3_6BY1_081 | 1/BA/1003:1007, 1/BA/1022:1028, 1/BA/1033:1037 | No text annotation | ||
| J3_6BY1_022 | 1/BA/1063:1068, 1/BA/1107:1113, 1/BA/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_6BY1_023 | 1/BA/1073:1075, 1/BA/1082:1087, 1/BA/1098:1102 | No text annotation | ||
| J3_6BY1_069 | 1/BA/1116:1119, 1/BA/1154:1158, 1/BA/1181:1184 | No text annotation | ||
| J3_6BY1_070 | 1/BA/1116:1119, 1/BA/1154:1161, 1/BA/1175:1184 | No text annotation | ||
| J3_6BY1_025 | 1/BA/1237:1241, 1/BA/1296:1303, 1/BA/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_6BY1_026 | 1/CA/30:31, 1/CA/474:481, 1/CA/509:510 | No text annotation | homologous J3_5J7L_036 J3_60031.2 | |
| J3_6BY1_071 | 1/CA/30:31, 1/CA/474:484, 1/CA/496:510 | No text annotation | homologous J3_9DFE_002 J3_92134.2 | |
| J3_6BY1_072 | 1/CA/32:35, 1/CA/445:461, 1/CA/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_6BY1_027 | 1/CA/56:57, 1/CA/70:76, 1/CA/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_6BY1_028 | 1/CA/683:689, 1/CA/773:775, 1/CA/791:794 | No text annotation | homologous J3_5J7L_038 J3_64189.2 | |
| J3_6BY1_029 | 1/CA/698:700, 1/CA/732:736, 1/CA/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_6BY1_030 | 1/CA/1055:1057, 1/CA/1081:1087, 1/CA/1102:1104 | No text annotation | homologous J3_5J7L_040 J3_28621.5 | |
| J3_6BY1_031 | 1/CA/1298:1303, 1/CA/1625:1627, 1/CA/1639:1642 | No text annotation | homologous J3_5J7L_041 J3_32852.6 | |
| J3_6BY1_032 | 1/CA/1306:1309, 1/CA/1605:1611, 1/CA/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_71677.1 | |
| J3_6BY1_033 | 1/CA/1344:1349, 1/CA/1382:1385, 1/CA/1402:1403 | No text annotation | homologous J3_5J7L_043 J3_92705.1 | |
| J3_6BY1_073 | 1/CA/1424:1429, 1/CA/1564:1565, 1/CA/1568:1574 | No text annotation | homologous J3_7A0S_019 J3_34864.2 | |
| J3_6BY1_034 | 1/CA/1663:1674, 1/CA/1990:1992, 1/CA/1996:1997 | No text annotation | ||
| J3_6BY1_035 | 1/CA/2091:2093, 1/CA/2196:2200, 1/CA/2223:2228 | Kink-turn 3-way junction | homologous J3_5J7L_044 J3_89368.5 | |
| J3_6BY1_074 | 1/CA/2282:2284, 1/CA/2384:2395, 1/CA/2421:2427 | No text annotation | homologous J3_5J7L_070 J3_20992.1 | |
| J3_6BY1_036 | 1/CA/2295:2299, 1/CA/2317:2323, 1/CA/2332:2337 | No text annotation | homologous J3_5J7L_071 J3_44961.1 | |
| J3_6BY1_037 | 1/CA/2517:2520, 1/CA/2545:2547, 1/CA/2561:2567 | No text annotation | homologous J3_5J7L_046 J3_32601.5 | |
| J3_6BY1_038 | 1/CA/2789:2791, 1/CA/2805:2806, 1/CA/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
| J3_6BY1_039 | 1/CA/2812:2815, 1/CA/2831:2836, 1/CA/2882:2888 | No text annotation | homologous J3_5J7L_048 J3_64069.1 | |
| J3_6BY1_040 | 1/CB/10:16, 1/CB/68:70, 1/CB/106:110 | No text annotation | homologous J3_5J7L_049 J3_89095.1 | |
| J3_6BY1_041 | 1/DA/30:31, 1/DA/474:481, 1/DA/509:510 | No text annotation | homologous J3_5J7L_036 J3_60031.2 | |
| J3_6BY1_076 | 1/DA/30:31, 1/DA/474:484, 1/DA/496:510 | No text annotation | homologous J3_9DFE_002 J3_92134.2 | |
| J3_6BY1_077 | 1/DA/32:35, 1/DA/445:461, 1/DA/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_6BY1_042 | 1/DA/56:57, 1/DA/70:76, 1/DA/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_6BY1_043 | 1/DA/683:689, 1/DA/773:775, 1/DA/791:794 | No text annotation | homologous J3_5J7L_038 J3_64189.2 | |
| J3_6BY1_044 | 1/DA/698:700, 1/DA/732:736, 1/DA/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_6BY1_045 | 1/DA/1055:1057, 1/DA/1081:1090, 1/DA/1101:1104 | No text annotation | ||
| J3_6BY1_046 | 1/DA/1298:1303, 1/DA/1625:1627, 1/DA/1639:1642 | No text annotation | homologous J3_5J7L_041 J3_32852.6 | |
| J3_6BY1_047 | 1/DA/1306:1309, 1/DA/1605:1611, 1/DA/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_71677.1 | |
| J3_6BY1_048 | 1/DA/1344:1349, 1/DA/1382:1385, 1/DA/1402:1403 | No text annotation | homologous J3_5J7L_043 J3_92705.1 | |
| J3_6BY1_078 | 1/DA/1424:1429, 1/DA/1564:1565, 1/DA/1568:1574 | No text annotation | homologous J3_5J7L_069 J3_34864.2 | |
| J3_6BY1_049 | 1/DA/2091:2093, 1/DA/2196:2200, 1/DA/2223:2228 | Kink-turn 3-way junction | homologous J3_5J7L_044 J3_89368.5 | |
| J3_6BY1_079 | 1/DA/2295:2299, 1/DA/2317:2323, 1/DA/2332:2337 | No text annotation | homologous J3_5J7L_071 J3_44961.1 | |
| J3_6BY1_051 | 1/DA/2517:2520, 1/DA/2545:2547, 1/DA/2561:2567 | No text annotation | homologous J3_5J7L_046 J3_32601.5 | |
| J3_6BY1_052 | 1/DA/2789:2791, 1/DA/2805:2806, 1/DA/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
| J3_6BY1_053 | 1/DA/2812:2815, 1/DA/2831:2836, 1/DA/2882:2888 | No text annotation | homologous J3_5J7L_048 J3_64069.1 | |
| J3_6BY1_054 | 1/DB/10:16, 1/DB/68:70, 1/DB/106:110 | No text annotation | homologous J3_7A0S_014 NA | |
| J4_6BY1_001 | 1/AA/115:122, 1/AA/239:240, 1/AA/286:289, 1/AA/311:312 | No text annotation | homologous J4_5J7L_001 J4_35578.3 | |
| J4_6BY1_002 | 1/AA/140:146, 1/AA/176:184, 1/AA/193:200, 1/AA/217:223 | No text annotation | ||
| J4_6BY1_003 | 1/AA/575:577, 1/AA/764:769, 1/AA/810:821, 1/AA/879:880 | No text annotation | homologous J4_5J7L_003 J4_61885.6 | |
| J4_6BY1_004 | 1/AV/7:10, 1/AV/25:27, 1/AV/43:49, 1/AV/65:66 | tRNA junction | homologous J4_5WT1_002 J4_40477.1 | |
| J4_6BY1_005 | 1/AW/7:10, 1/AW/25:27, 1/AW/43:49, 1/AW/65:66 | tRNA junction | homologous J4_7MRL_001 J4_70449.29 | |
| J4_6BY1_006 | 1/AY/7:10, 1/AY/25:27, 1/AY/43:51, 1/AY/63:66 | No text annotation | homologous J4_7U2I_014 J4_47701.1 | |
| J4_6BY1_007 | 1/BA/115:123, 1/BA/238:240, 1/BA/286:289, 1/BA/311:312 | No text annotation | ||
| J4_6BY1_034 | 1/BA/142:146, 1/BA/176:184, 1/BA/193:198, 1/BA/219:221 | No text annotation | ||
| J4_6BY1_009 | 1/BA/575:577, 1/BA/764:769, 1/BA/810:821, 1/BA/879:880 | No text annotation | homologous J4_6CZR_013 NA | |
| J4_6BY1_010 | 1/BV/7:10, 1/BV/25:27, 1/BV/43:49, 1/BV/65:66 | tRNA junction | homologous J4_5WT1_002 J4_40477.1 | |
| J4_6BY1_035 | 1/BW/7:10, 1/BW/25:27, 1/BW/43:49, 1/BW/65:66 | tRNA junction | homologous J4_6CFJ_015 J4_70449.29 | |
| J4_6BY1_012 | 1/CA/268:269, 1/CA/370:375, 1/CA/399:406, 1/CA/421:424 | No text annotation | homologous J4_5J7L_018 J4_45801.6 | |
| J4_6BY1_013 | 1/CA/297:301, 1/CA/316:319, 1/CA/323:325, 1/CA/337:341 | No text annotation | homologous J4_5J7L_019 J4_71729.5 | |
| J4_6BY1_014 | 1/CA/601:604, 1/CA/624:628, 1/CA/635:638, 1/CA/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_6BY1_015 | 1/CA/1270:1276, 1/CA/1294:1295, 1/CA/1645:1648, 1/CA/2009:2010 | No text annotation | homologous J4_5J7L_021 J4_64571.5 | |
| J4_6BY1_016 | 1/CA/1310:1314, 1/CA/1338:1343, 1/CA/1404:1405, 1/CA/1597:1604 | No text annotation | homologous J4_5J7L_022 J4_69051.6 | |
| J4_6BY1_017 | 1/CA/1313:1314, 1/CA/1338:1343, 1/CA/1404:1405, 1/CA/1597:1603 | No text annotation | homologous J4_5J7L_023 J4_10313.5 | |
| J4_6BY1_036 | 1/CA/1444:1445, 1/CA/1466:1467, 1/CA/1525:1526, 1/CA/1546:1547 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_6BY1_018 | 1/CA/1444:1446, 1/CA/1465:1467, 1/CA/1525:1526, 1/CA/1546:1547 | No text annotation | ||
| J4_6BY1_019 | 1/CA/1772:1776, 1/CA/1788:1792, 1/CA/1827:1830, 1/CA/1975:1979 | No text annotation | homologous J4_7A0S_008 J4_61477.5 | |
| J4_6BY1_020 | 1/CA/1833:1835, 1/CA/1905:1906, 1/CA/1924:1933, 1/CA/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_6BY1_037 | 1/CA/2285:2290, 1/CA/2342:2347, 1/CA/2370:2372, 1/CA/2381:2383 | No text annotation | ||
| J4_6BY1_022 | 1/CA/2643:2646, 1/CA/2674:2676, 1/CA/2731:2735, 1/CA/2769:2771 | No text annotation | homologous J4_5J7L_028 J4_77044.4 | |
| J4_6BY1_023 | 1/DA/268:269, 1/DA/370:375, 1/DA/399:406, 1/DA/421:424 | No text annotation | homologous J4_5J7L_018 J4_45801.6 | |
| J4_6BY1_024 | 1/DA/297:301, 1/DA/316:319, 1/DA/323:325, 1/DA/337:341 | No text annotation | homologous J4_5J7L_019 J4_71729.5 | |
| J4_6BY1_025 | 1/DA/601:604, 1/DA/624:628, 1/DA/635:638, 1/DA/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_6BY1_026 | 1/DA/1270:1276, 1/DA/1294:1295, 1/DA/1645:1648, 1/DA/2009:2010 | No text annotation | homologous J4_5J7L_021 J4_64571.5 | |
| J4_6BY1_027 | 1/DA/1310:1314, 1/DA/1338:1343, 1/DA/1404:1405, 1/DA/1597:1604 | No text annotation | homologous J4_5J7L_022 J4_69051.6 | |
| J4_6BY1_028 | 1/DA/1313:1314, 1/DA/1338:1343, 1/DA/1404:1405, 1/DA/1597:1603 | No text annotation | homologous J4_5J7L_023 J4_10313.5 | |
| J4_6BY1_038 | 1/DA/1444:1445, 1/DA/1466:1467, 1/DA/1525:1526, 1/DA/1546:1547 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_6BY1_029 | 1/DA/1444:1446, 1/DA/1465:1467, 1/DA/1525:1526, 1/DA/1546:1547 | No text annotation | ||
| J4_6BY1_030 | 1/DA/1772:1776, 1/DA/1788:1792, 1/DA/1827:1830, 1/DA/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_6BY1_031 | 1/DA/1833:1835, 1/DA/1905:1906, 1/DA/1924:1933, 1/DA/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_6BY1_039 | 1/DA/2285:2291, 1/DA/2341:2347, 1/DA/2370:2372, 1/DA/2381:2383 | No text annotation | ||
| J4_6BY1_033 | 1/DA/2643:2646, 1/DA/2674:2676, 1/DA/2731:2735, 1/DA/2769:2771 | No text annotation | homologous J4_5J7L_028 J4_77044.4 | |
| J5_6BY1_001 | 1/AA/36:39, 1/AA/403:406, 1/AA/436:440, 1/AA/497:500, 1/AA/545:548 | No text annotation | homologous J5_5J7L_001 J5_92941.1 | |
| J5_6BY1_002 | 1/AA/36:39, 1/AA/403:406, 1/AA/436:442, 1/AA/492:500, 1/AA/545:548 | No text annotation | homologous J5_5J7L_002 J5_67416.1 | |
| J5_6BY1_003 | 1/AA/58:61, 1/AA/106:113, 1/AA/314:316, 1/AA/337:339, 1/AA/350:354 | No text annotation | homologous J5_6CZR_021 NA | |
| J5_6BY1_004 | 1/BA/36:39, 1/BA/403:406, 1/BA/436:440, 1/BA/497:500, 1/BA/545:548 | No text annotation | homologous J5_5J7L_001 J5_92941.1 | |
| J5_6BY1_005 | 1/BA/36:39, 1/BA/403:406, 1/BA/436:442, 1/BA/492:500, 1/BA/545:548 | No text annotation | homologous J5_5J7L_002 J5_67416.1 | |
| J5_6BY1_006 | 1/BA/58:61, 1/BA/106:113, 1/BA/314:316, 1/BA/337:339, 1/BA/350:354 | No text annotation | homologous J5_5J7L_003 J5_59910.6 | |
| J5_6BY1_007 | 1/CA/47:54, 1/CA/116:121, 1/CA/130:131, 1/CA/148:150, 1/CA/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_6BY1_008 | 1/CA/531:533, 1/CA/560:564, 1/CA/577:579, 1/CA/1261:1262, 1/CA/2017:2018 | No text annotation | homologous J5_5J7L_014 J5_43153.5 | |
| J5_6BY1_009 | 1/CA/584:589, 1/CA/668:671, 1/CA/809:812, 1/CA/1195:1196, 1/CA/1250:1256 | No text annotation | homologous J5_5J7L_015 J5_74302.5 | |
| J5_6BY1_010 | 1/CA/1674:1682, 1/CA/1706:1707, 1/CA/1751:1752, 1/CA/1756:1764, 1/CA/1988:1990 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
| J5_6BY1_011 | 1/CA/2057:2064, 1/CA/2446:2453, 1/CA/2500:2507, 1/CA/2582:2588, 1/CA/2606:2611 | No text annotation | ||
| J5_6BY1_012 | 1/CA/2074:2077, 1/CA/2243:2246, 1/CA/2258:2259, 1/CA/2281:2282, 1/CA/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.1 | |
| J5_6BY1_013 | 1/DA/47:54, 1/DA/116:121, 1/DA/130:131, 1/DA/148:150, 1/DA/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_6BY1_014 | 1/DA/531:533, 1/DA/560:564, 1/DA/577:579, 1/DA/1261:1262, 1/DA/2017:2018 | No text annotation | homologous J5_5J7L_014 J5_43153.5 | |
| J5_6BY1_018 | 1/DA/584:589, 1/DA/668:671, 1/DA/809:812, 1/DA/1195:1196, 1/DA/1250:1256 | No text annotation | homologous J5_5J7L_015 J5_74302.5 | |
| J5_6BY1_016 | 1/DA/1674:1682, 1/DA/1706:1707, 1/DA/1751:1752, 1/DA/1756:1764, 1/DA/1988:1990 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
| J5_6BY1_019 | 1/DA/2057:2064, 1/DA/2446:2453, 1/DA/2500:2506, 1/DA/2583:2588, 1/DA/2606:2611 | No text annotation | ||
| J6_6BY1_005 | 1/CA/45:46, 1/CA/179:183, 1/CA/214:224, 1/CA/231:235, 1/CA/262:266, 1/CA/426:433 | No text annotation | ||
| J6_6BY1_002 | 1/CA/2074:2077, 1/CA/2243:2246, 1/CA/2258:2259, 1/CA/2281:2284, 1/CA/2384:2395, 1/CA/2421:2435 | No text annotation | ||
| J6_6BY1_003 | 1/DA/45:46, 1/DA/179:183, 1/DA/214:224, 1/DA/231:235, 1/DA/262:266, 1/DA/426:433 | No text annotation | ||
| J6_6BY1_006 | 1/DA/2074:2077, 1/DA/2243:2246, 1/DA/2258:2259, 1/DA/2281:2284, 1/DA/2384:2395, 1/DA/2421:2435 | No text annotation | ||
| J7_6BY1_001 | 1/CA/8:15, 1/CA/525:531, 1/CA/2018:2023, 1/CA/2040:2043, 1/CA/2625:2630, 1/CA/2788:2789, 1/CA/2894:2895 | No text annotation | ||
| J7_6BY1_002 | 1/CA/817:822, 1/CA/835:838, 1/CA/940:946, 1/CA/971:976, 1/CA/987:991, 1/CA/1163:1164, 1/CA/1185:1190 | No text annotation | ||
| J7_6BY1_003 | 1/DA/8:15, 1/DA/525:531, 1/DA/2018:2023, 1/DA/2040:2043, 1/DA/2625:2630, 1/DA/2788:2789, 1/DA/2894:2895 | No text annotation | ||
| J7_6BY1_004 | 1/DA/817:822, 1/DA/835:837, 1/DA/942:946, 1/DA/971:976, 1/DA/987:991, 1/DA/1163:1164, 1/DA/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6BY1_057 | No text annotation | ||
| J3_6BY1_058 | No text annotation | ||
| J3_6BY1_007 | No text annotation | ||
| J3_6BY1_060 | No text annotation | ||
| J3_6BY1_064 | No text annotation | ||
| J3_6BY1_067 | No text annotation | ||
| J3_6BY1_068 | No text annotation | ||
| J3_6BY1_024 | No text annotation | ||
| J3_6BY1_075 | No text annotation | ||
| J3_6BY1_050 | No text annotation | ||
| J4_6BY1_008 | No text annotation | ||
| J4_6BY1_011 | tRNA junction | ||
| J4_6BY1_021 | No text annotation | ||
| J4_6BY1_032 | No text annotation | ||
| J5_6BY1_015 | No text annotation | ||
| J5_6BY1_017 | No text annotation | ||
| J6_6BY1_001 | No text annotation | ||
| J6_6BY1_004 | No text annotation |
Coloring options: