HL_6BY1_083

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

6BY1|1|CA|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BY1_083 not in the Motif Atlas

Geometric match to HL_6QN3_001

Geometric discrepancy: 0.2779

The information below is about HL_6QN3_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6BY1|1|CA|U|137
6BY1|1|CA|U|138
6BY1|1|CA|U|139
6BY1|1|CA|C|140
6BY1|1|CA|G|141
6BY1|1|CA|A|142

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CT

50S ribosomal protein L23