HL_6BY1_105

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

6BY1|1|CA|U|958, 6BY1|1|CA|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BY1_105 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.1255

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6BY1|1|CA|U|955
6BY1|1|CA|G|956
6BY1|1|CA|C|957
6BY1|1|CA|U|958
6BY1|1|CA|A|959
6BY1|1|CA|A|960
6BY1|1|CA|C|961
6BY1|1|CA|G|962

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CB

5S ribosomal RNA; 5S rRNA

Chain CM

50S ribosomal protein L16