HL_6BY1_119

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

6BY1|1|CA|A|1614, 6BY1|1|CA|A|1616, 6BY1|1|CA|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BY1_119 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.1442

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

12

Unit IDs

6BY1|1|CA|C|1612
6BY1|1|CA|G|1613
6BY1|1|CA|A|1614
6BY1|1|CA|C|1615
6BY1|1|CA|A|1616
6BY1|1|CA|C|1617
6BY1|1|CA|A|1618
6BY1|1|CA|G|1619

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C3

50S ribosomal protein L34

Chain CS

50S ribosomal protein L22