HL_6BY1_130

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

6BY1|1|CA|A|2030, 6BY1|1|CA|A|2031, 6BY1|1|CA|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BY1_130 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1846

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6BY1|1|CA|G|2027
6BY1|1|CA|U|2028
6BY1|1|CA|G|2029
6BY1|1|CA|A|2030
6BY1|1|CA|A|2031
6BY1|1|CA|G|2032
6BY1|1|CA|A|2033
6BY1|1|CA|U|2034
6BY1|1|CA|G|2035
6BY1|1|CA|C|2036

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C1

50S ribosomal protein L32

Chain CD

50S ribosomal protein L3

Chain CR

50S ribosomal protein L21