HL_6BY1_135

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BY1_135 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.1881

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6BY1|1|CA|G|2303
6BY1|1|CA|G|2304
6BY1|1|CA|U|2305
6BY1|1|CA|C|2306
6BY1|1|CA|G|2307
6BY1|1|CA|G|2308
6BY1|1|CA|A|2309
6BY1|1|CA|C|2310
6BY1|1|CA|A|2311
6BY1|1|CA|U|2312
6BY1|1|CA|C|2313

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CF

50S ribosomal protein L5