HL_6BY1_146

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6BY1|1|CA|G|2751, 6BY1|1|CA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BY1_146 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1626

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6BY1|1|CA|C|2745
6BY1|1|CA|U|2746
6BY1|1|CA|G|2747
6BY1|1|CA|A|2748
6BY1|1|CA|A|2749
6BY1|1|CA|A|2750
6BY1|1|CA|G|2751
6BY1|1|CA|C|2752
6BY1|1|CA|A|2753
6BY1|1|CA|U|2754
6BY1|1|CA|C|2755
6BY1|1|CA|U|2756
6BY1|1|CA|A|2757
6BY1|1|CA|A|2758
6BY1|1|CA|G|2759

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C6

50S ribosomal protein L36

Chain CG

50S ribosomal protein L6

Chain CJ

50S ribosomal protein L13