HL_6BY1_160

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

6BY1|1|DA|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BY1_160 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1772

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

6BY1|1|DA|C|305
6BY1|1|DA|U|306
6BY1|1|DA|G|307
6BY1|1|DA|G|308
6BY1|1|DA|A|309
6BY1|1|DA|A|310
6BY1|1|DA|A|311
6BY1|1|DA|G|312

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DU

50S ribosomal protein L24