HL_6BY1_188

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GGCAAAUCC

Length

9 nucleotides

Bulged bases

6BY1|1|DA|C|1493, 6BY1|1|DA|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BY1_188 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.2993

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

6BY1|1|DA|G|1491
6BY1|1|DA|G|1492
6BY1|1|DA|C|1493
6BY1|1|DA|A|1494
6BY1|1|DA|A|1495
6BY1|1|DA|A|1496
6BY1|1|DA|U|1497
6BY1|1|DA|C|1498
6BY1|1|DA|C|1499

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DC

50S ribosomal protein L2