HL_6BY1_210

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

6BY1|1|DA|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BY1_210 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.1362

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

6BY1|1|DA|U|2404
6BY1|1|DA|G|2405
6BY1|1|DA|A|2406
6BY1|1|DA|A|2407
6BY1|1|DA|U|2408
6BY1|1|DA|G|2409
6BY1|1|DA|G|2410
6BY1|1|DA|A|2411
6BY1|1|DA|A|2412
6BY1|1|DA|G|2413

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DL

50S ribosomal protein L15