HL_6BY1_219

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

6BY1|1|DA|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BY1_219 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.1624

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6BY1|1|DA|G|2819
6BY1|1|DA|A|2820
6BY1|1|DA|A|2821
6BY1|1|DA|G|2822
6BY1|1|DA|A|2823
6BY1|1|DA|C|2824
6BY1|1|DA|G|2825
6BY1|1|DA|A|2826
6BY1|1|DA|C|2827

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DD

50S ribosomal protein L3

Chain DN

50S ribosomal protein L17

Chain DP

50S ribosomal protein L19