HL_6C0F_008

3D structure

PDB id

6C0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast nucleolar pre-60S ribosomal subunit (state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUUUG

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C0F_008 not in the Motif Atlas

Geometric match to HL_8C3A_018

Geometric discrepancy: 0.3419

The information below is about HL_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

6C0F|1|1|U|278
6C0F|1|1|U|279
6C0F|1|1|U|280
6C0F|1|1|U|286
6C0F|1|1|G|287

Current chains

Chain 1

Saccharomyces cerevisiae S288c 35S pre-ribosomal RNA miscRNA

Nearby chains

Chain N

60S ribosomal protein L15-A

Chain b

Ribosome biogenesis protein BRX1