HL_6C27_003

3D structure

PDB id

6C27 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SAM-III riboswitch ON-state

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCGAAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C27_003 not in the Motif Atlas

Geometric match to HL_3LA5_002

Geometric discrepancy: 0.3062

The information below is about HL_3LA5_002

Detailed Annotation

Purine riboswitch

Broad Annotation

Purine riboswitch

Motif group

HL_46333.1

Basepair signature

cWW-R-cSH

Number of instances in this motif group

11

Unit IDs

6C27|1|B|C|12
6C27|1|B|C|13
6C27|1|B|G|14
6C27|1|B|A|15
6C27|1|B|A|16
6C27|1|B|A|17
6C27|1|B|G|18

Current chains

Chain B

SAM-III riboswitch

Nearby chains