HL_6C4H_014

3D structure

PDB id

6C4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination (PTC region)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

C(OMU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C4H_014 not in the Motif Atlas

Homologous match to HL_5J7L_195

Geometric discrepancy: 0.0967

The information below is about HL_5J7L_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6C4H|1|A|C|2551
6C4H|1|A|OMU|2552
6C4H|1|A|G|2553
6C4H|1|A|U|2554
6C4H|1|A|U|2555
6C4H|1|A|C|2556
6C4H|1|A|G|2557

Current chains

Chain A

23S rRNA

Nearby chains

Chain v

Peptide chain release factor RF2