HL_6C4I_013

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6C4I|1|A|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C4I_013 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.0839

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6C4I|1|A|G|410
6C4I|1|A|G|411
6C4I|1|A|A|412
6C4I|1|A|C|413
6C4I|1|A|C|414
6C4I|1|A|A|415
6C4I|1|A|U|416
6C4I|1|A|C|417

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L15