HL_6C4I_048
3D structure
- PDB id
- 6C4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the peptidyl transferase center during translation termination
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.24 Å
Loop
- Sequence
- G(PSU)AAC(3TD)A(PSU)AAC
- Length
- 11 nucleotides
- Bulged bases
- 6C4I|1|A|A|1913, 6C4I|1|A|C|1914, 6C4I|1|A|A|1916
- QA status
- Modified nucleotides: PSU, 3TD
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6C4I_048 not in the Motif Atlas
- Homologous match to HL_5J7L_181
- Geometric discrepancy: 0.1021
- The information below is about HL_5J7L_181
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_25847.2
- Basepair signature
- cWW-F-cSH-tHW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6C4I|1|A|G|1910
6C4I|1|A|PSU|1911
6C4I|1|A|A|1912
6C4I|1|A|A|1913
6C4I|1|A|C|1914
6C4I|1|A|3TD|1915
6C4I|1|A|A|1916
6C4I|1|A|PSU|1917
6C4I|1|A|A|1918
6C4I|1|A|A|1919
6C4I|1|A|C|1920
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain v
- Peptide chain release factor 2
- Chain w
- Alternative ribosome-rescue factor A
- Chain x
- Transfer RNA; tRNA
Coloring options: