HL_6C4I_066

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6C4I|1|A|G|2751, 6C4I|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C4I_066 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0597

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6C4I|1|A|C|2745
6C4I|1|A|U|2746
6C4I|1|A|G|2747
6C4I|1|A|A|2748
6C4I|1|A|A|2749
6C4I|1|A|A|2750
6C4I|1|A|G|2751
6C4I|1|A|C|2752
6C4I|1|A|A|2753
6C4I|1|A|U|2754
6C4I|1|A|C|2755
6C4I|1|A|U|2756
6C4I|1|A|A|2757
6C4I|1|A|A|2758
6C4I|1|A|G|2759

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain K

50S ribosomal protein L13