HL_6C4I_079

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C4I_079 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0755

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6C4I|1|a|A|320
6C4I|1|a|A|321
6C4I|1|a|C|322
6C4I|1|a|U|323
6C4I|1|a|G|324
6C4I|1|a|A|325
6C4I|1|a|G|326
6C4I|1|a|A|327
6C4I|1|a|C|328
6C4I|1|a|A|329
6C4I|1|a|C|330
6C4I|1|a|G|331
6C4I|1|a|G|332
6C4I|1|a|U|333

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20