3D structure

PDB id
6C4I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Conformation of methylated GGQ in the peptidyl transferase center during translation termination
Experimental method
ELECTRON MICROSCOPY
Resolution
3.24 Å

Loop

Sequence
CUGCAACUCG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6C4I_099 not in the Motif Atlas
Homologous match to HL_5J7L_028
Geometric discrepancy: 0.0749
The information below is about HL_5J7L_028
Detailed Annotation
T-loop with 3 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_02887.3
Basepair signature
cWW-tWH-F-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

6C4I|1|a|C|1314
6C4I|1|a|U|1315
6C4I|1|a|G|1316
6C4I|1|a|C|1317
6C4I|1|a|A|1318
6C4I|1|a|A|1319
6C4I|1|a|C|1320
6C4I|1|a|U|1321
6C4I|1|a|C|1322
6C4I|1|a|G|1323

Current chains

Chain a
16S rRNA

Nearby chains

Chain m
30S ribosomal protein S13
Chain n
30S ribosomal protein S14
Chain s
30S ribosomal protein S19

Coloring options:


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