HL_6C4I_104
3D structure
- PDB id
- 6C4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the peptidyl transferase center during translation termination
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.24 Å
Loop
- Sequence
- GGCUCAUAACC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6C4I_104 not in the Motif Atlas
- Homologous match to HL_5IB8_208
- Geometric discrepancy: 0.2933
- The information below is about HL_5IB8_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_14063.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
6C4I|1|x|G|30
6C4I|1|x|G|31
6C4I|1|x|C|32
6C4I|1|x|U|33
6C4I|1|x|C|34
6C4I|1|x|A|35
6C4I|1|x|U|36
6C4I|1|x|A|37
6C4I|1|x|A|38
6C4I|1|x|C|39
6C4I|1|x|C|40
Current chains
- Chain x
- E-site or P-site tRNA fMet
Nearby chains
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain i
- 30S ribosomal protein S9
- Chain v
- Peptide chain release factor 2
- Chain y
- Transfer RNA; tRNA
- Chain z
- mRNA
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