HL_6C4I_107
3D structure
- PDB id
- 6C4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the peptidyl transferase center during translation termination
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.24 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6C4I_107 not in the Motif Atlas
- Homologous match to HL_5UD5_002
- Geometric discrepancy: 0.3863
- The information below is about HL_5UD5_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_77082.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6C4I|1|y|G|32
6C4I|1|y|C|33
6C4I|1|y|U|34
6C4I|1|y|C|35
6C4I|1|y|A|36
6C4I|1|y|U|37
6C4I|1|y|A|38
6C4I|1|y|A|39
6C4I|1|y|C|40
Current chains
- Chain y
- E-site or P-site tRNA fMet
Nearby chains
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain g
- 30S ribosomal protein S7
- Chain k
- 30S ribosomal protein S11
- Chain x
- Transfer RNA; tRNA
- Chain z
- mRNA
Coloring options: